getGroupSummary: Get summary for Groups in ArchRProject

In GreenleafLab/ArchR: Analyzing single-cell regulatory chromatin in R.

Get summary for Groups in ArchRProject

Description

This function summarizes a numeric cellColData entry across groupings in a ArchRProject.

Usage

getGroupSummary(
  ArchRProj = NULL,
  groupBy = "Sample",
  select = "TSSEnrichment",
  summary = "median",
  removeNA = TRUE
)

Arguments

ArchRProj	An ArchRProject object.
groupBy	The name of the column in cellColData to use for grouping multiple cells together for summarizing information.
select	A character vector containing the column names to select from cellColData.
summary	A character vector describing which method for summarizing across group. Options include "median", "mean", or "sum".
removeNA	Remove NA's from summary method.

Examples

# Get Test ArchR Project
proj <- getTestProject()

# Get Group Summary
getGroupSummary(proj, groupBy = "Clusters", select = "TSSEnrichment", summary = "mean")

GreenleafLab/ArchR documentation built on Feb. 21, 2025, 3:05 p.m.