getInputFiles: Get Input Files from paths to create arrows
In GreenleafLab/ArchR: Analyzing single-cell regulatory chromatin in R.
getInputFiles R Documentation
Get Input Files from paths to create arrows
Description
This function will look for fragment files and bam files in the input paths and return the full path and sample names.
Only files that match ".fragments.tsv.gz" and ".bam" will be captured. This function requires there to be a prefix
before ".fragments.tsv.gz" or ".bam" because this prefix will be used as the sample name. For example, "Sample1.fragments.tsv.gz"
would be imported with the name "Sample1".
Usage
getInputFiles(paths = NULL)
Arguments
paths
A character vector of paths to search for usable input files.
GreenleafLab/ArchR documentation built on Feb. 21, 2025, 3:05 p.m.
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| getInputFiles | R Documentation |
Get Input Files from paths to create arrows
Description
This function will look for fragment files and bam files in the input paths and return the full path and sample names. Only files that match ".fragments.tsv.gz" and ".bam" will be captured. This function requires there to be a prefix before ".fragments.tsv.gz" or ".bam" because this prefix will be used as the sample name. For example, "Sample1.fragments.tsv.gz" would be imported with the name "Sample1".
Usage
getInputFiles(paths = NULL)
Arguments
paths |
A character vector of paths to search for usable input files. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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