getMatches: Get peak annotation matches from an ArchRProject

In GreenleafLab/ArchR: Analyzing single-cell regulatory chromatin in R.

Get peak annotation matches from an ArchRProject

Description

This function gets peak annotation matches from a given ArchRProject. The peaks in the returned object are in the same order as the peaks returned by getPeakSet().

Usage

getMatches(ArchRProj = NULL, name = NULL, annoName = NULL)

Arguments

ArchRProj	An ArchRProject object.
name	The name of the peakAnnotation object (i.e. Motifs) to retrieve from the designated ArchRProject.
annoName	The name of a specific annotation to subset within the peakAnnotation.

Examples

# Get Test ArchR Project
proj <- getTestProject()

# Get Annotation Matches
matches <- getMatches(proj)

GreenleafLab/ArchR documentation built on Feb. 21, 2025, 3:05 p.m.