getTSS: Get the transcription start sites of all genes in an...

In GreenleafLab/ArchR: Analyzing single-cell regulatory chromatin in R.

Get the transcription start sites of all genes in an ArchRProject

Description

This function gets the transcription start sites (TSSs) as a GRanges object of all genes from the geneAnnotation of a given ArchRProject.

Usage

getTSS(ArchRProj = NULL)

Arguments

ArchRProj

An ArchRProject object.

Examples

# Get Test ArchR Project
proj <- getTestProject()

# Get TSS in ArchRProj
getTSS(proj)

# Get TSS loaded globally
getTSS()

GreenleafLab/ArchR documentation built on Feb. 21, 2025, 3:05 p.m.