getVarDeviations: Get Variable Deviations across cells in ArchRProject.
In GreenleafLab/ArchR: Analyzing single-cell regulatory chromatin in R.
getVarDeviations R Documentation
Get Variable Deviations across cells in ArchRProject.
Description
This function will rank the variability of the deviations computed by ArchR and label the top variable annotations.
Usage
getVarDeviations(ArchRProj = NULL, name = "MotifMatrix", plot = TRUE, n = 25)
Arguments
ArchRProj
An ArchRProject object.
name
The name of the DeviationsMatrix object stored in the ArchRProject. See addDeviationsMatrix().
plot
A boolean value indicating whether the ranked variability should be plotted for each peakAnnotation in DeviationsMatrix.
n
The number of annotations to label with ggrepel.
GreenleafLab/ArchR documentation built on Feb. 28, 2024, 4:17 p.m.
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| getVarDeviations | R Documentation |
Get Variable Deviations across cells in ArchRProject.
Description
This function will rank the variability of the deviations computed by ArchR and label the top variable annotations.
Usage
getVarDeviations(ArchRProj = NULL, name = "MotifMatrix", plot = TRUE, n = 25)
Arguments
ArchRProj |
An |
name |
The name of the |
plot |
A boolean value indicating whether the ranked variability should be plotted for each peakAnnotation in |
n |
The number of annotations to label with |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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