plotEnrichHeatmap | R Documentation |
This function will plot a heatmap of hypergeometric enrichment of a given peakAnnotation within the defined marker peaks.
plotEnrichHeatmap(
seEnrich = NULL,
pal = paletteContinuous(set = "comet", n = 100),
n = 10,
cutOff = 20,
pMax = Inf,
clusterCols = TRUE,
binaryClusterRows = TRUE,
labelRows = TRUE,
rastr = TRUE,
transpose = FALSE,
returnMatrix = FALSE,
logFile = createLogFile("plotEnrichHeatmap")
)
seEnrich |
A |
pal |
A custom continuous palette (see |
n |
The number of top enriched peakAnnotations per column from the |
cutOff |
A numeric cutOff that indicates the minimum P-adj enrichment to be included in the heatmap. |
pMax |
A numeric representing the maximum P-adj for plotting in the heatmap. |
clusterCols |
A boolean indicating whether or not to cluster columns in the heatmap. |
binaryClusterRows |
A boolean indicating whether or not to cluster rows using binary classification in the heatmap. |
labelRows |
A boolean indicating whether or not to label all rows in the heatmap. |
rastr |
A boolean value that indicates whether the plot should be rasterized using |
transpose |
A boolean determining whether to transpose the heatmap in the plot. |
returnMatrix |
A boolean determining whether to return the matrix corresponding to the heatmap rather than generate a plot. |
logFile |
The path to a file to be used for logging ArchR output. |
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