plotMarkerHeatmap | R Documentation |
This function will plot a heatmap of the results from markerFeatures
plotMarkerHeatmap(
seMarker = NULL,
cutOff = "FDR <= 0.01 & Log2FC >= 0.5",
log2Norm = TRUE,
scaleTo = 10^4,
scaleRows = TRUE,
plotLog2FC = FALSE,
limits = c(-2, 2),
grepExclude = NULL,
pal = NULL,
binaryClusterRows = TRUE,
clusterCols = TRUE,
labelMarkers = NULL,
nLabel = 15,
nPrint = 15,
labelRows = FALSE,
returnMatrix = FALSE,
transpose = FALSE,
invert = FALSE,
logFile = createLogFile("plotMarkerHeatmap")
)
seMarker |
A |
cutOff |
A valid-syntax logical statement that defines which marker features from |
log2Norm |
A boolean value indicating whether a log2 transformation should be performed on the values in
|
scaleTo |
Each column in the assay Mean from |
scaleRows |
A boolean value that indicates whether the heatmap should display row-wise z-scores instead of raw values. |
limits |
A numeric vector of two numbers that represent the lower and upper limits of the heatmap color scheme. |
grepExclude |
A character vector or string that indicates the |
pal |
A custom continuous palette from |
binaryClusterRows |
A boolean value that indicates whether a binary sorting algorithm should be used for fast clustering of heatmap rows. |
clusterCols |
A boolean value that indicates whether the columns of the marker heatmap should be clustered. |
labelMarkers |
A character vector listing the |
nLabel |
An integer value that indicates whether the top |
nPrint |
If provided |
labelRows |
A boolean value that indicates whether all rows should be labeled on the side of the heatmap. |
returnMatrix |
A boolean value that indicates whether the final heatmap matrix should be returned in lieu of plotting the actual heatmap. |
transpose |
A boolean value that indicates whether the heatmap should be transposed prior to plotting or returning. |
invert |
A boolean value that indicates whether the heatmap will display the features with the
lowest |
logFile |
The path to a file to be used for logging ArchR output. |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.