View source: R/BulkProjection.R
projectBulkATAC | R Documentation |
This function will Project Bulk ATAC-seq data into single cell subspace.
projectBulkATAC(
ArchRProj = NULL,
seATAC = NULL,
reducedDims = "IterativeLSI",
embedding = "UMAP",
n = 250,
verbose = TRUE,
threads = getArchRThreads(),
force = FALSE,
logFile = createLogFile("projectBulkATAC")
)
ArchRProj |
An |
seATAC |
A |
reducedDims |
A string specifying the name of the |
embedding |
A string specifying the name of the |
n |
An integer specifying the number of subsampled "pseudo single cells" per bulk sample. |
verbose |
A boolean value indicating whether to use verbose output during execution of this function. Can be set to FALSE for a cleaner output. |
threads |
The number of threads used for parallel execution |
force |
A boolean value indicating whether to force the projection of bulk ATAC data even if fewer than 25% of the features are present in the bulk ATAC data set. |
logFile |
The path to a file to be used for logging ArchR output. |
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