saveArchRProject: Save ArchRProject for Later Usage

In GreenleafLab/ArchR: Analyzing single-cell regulatory chromatin in R.

Save ArchRProject for Later Usage

Description

This function will organize arrows and project output into a directory and save the ArchRProject for later usage.

Usage

saveArchRProject(
  ArchRProj = NULL,
  outputDirectory = getOutputDirectory(ArchRProj),
  overwrite = TRUE,
  load = TRUE,
  dropCells = FALSE,
  logFile = createLogFile("saveArchRProject"),
  threads = getArchRThreads()
)

Arguments

ArchRProj	An ArchRProject object.
outputDirectory	A directory path to save all ArchR output and ArchRProject to. Default is outputDirectory of the ArchRProject.
overwrite	When writing to outputDirectory, overwrite existing files with new files.
dropCells	A boolean indicating whether to drop cells that are not in ArchRProject from corresponding Arrow Files.
logFile	The path to a file to be used for logging ArchR output.
threads	The number of threads to use for parallel execution.

Examples

# Get Small Test Project
proj <- getTestProject()

# Save
saveArchRProject(proj)

GreenleafLab/ArchR documentation built on Feb. 21, 2025, 3:05 p.m.