theme_ArchR: ggplot2 default theme for ArchR

In GreenleafLab/ArchR: Analyzing single-cell regulatory chromatin in R.

ggplot2 default theme for ArchR

Description

This function returns a ggplot2 theme that is black borded with black font.

Usage

theme_ArchR(
  color = "black",
  textFamily = "sans",
  baseSize = 10,
  baseLineSize = 0.5,
  baseRectSize = 0.5,
  plotMarginCm = 1,
  legendPosition = "bottom",
  legendTextSize = 5,
  axisTickCm = 0.1,
  xText90 = FALSE,
  yText90 = FALSE
)

Arguments

color	The color to be used for text, lines, ticks, etc for the plot.
textFamily	The font default family to be used for the plot.
baseSize	The base font size (in points) to use in the plot.
baseLineSize	The base line width (in points) to be used throughout the plot.
baseRectSize	The base line width (in points) to use for rectangular boxes throughout the plot.
plotMarginCm	The width in centimeters of the whitespace margin around the plot.
legendPosition	The location to put the legend. Valid options are "bottom", "top", "left", and "right.
legendTextSize	The base text size (in points) for the legend text.
axisTickCm	The length in centimeters to be used for the axis ticks.
xText90	A boolean value indicating whether the x-axis text should be rotated 90 degrees counterclockwise.
yText90	A boolean value indicating whether the y-axis text should be rotated 90 degrees counterclockwise.

Examples

# Create Random Data
m <- data.frame(x=matrix(rnorm(10, 2),ncol=1))
m$color <- sample(c("A", "B"), 10, replace = TRUE)

# Plot
p <- ggGroup(x = m$color, y = m$x) + theme_ArchR()

# To PDF
pdf("test.pdf", width = 4, height = 7)
p
dev.off()

GreenleafLab/ArchR documentation built on Feb. 21, 2025, 3:05 p.m.