Man pages for GreenwoodLab/funtooNorm
Normalization Procedure for Infinium HumanMethylation450 BeadChip Kit
| agreement | Function to measure intra-replicate agreement for methylation... |
| fromGenStudFiles | Creates a S4 object of class 'SampleSet' from GenomeStudio... |
| fromRGChannelSet | Creates an object of class SampleSet from a RGChannelSet... |
| funtooNorm | The funtooNorm normalization function |
| funtooNorm-package | funtooNorm |
| getGRanges | Build GRange object of methylation probes |
| getNormBeta | Computes Beta values from normalized signals |
| getNormM | Computes M values,log2(Meth/Unmeth), from normalized signals |
| getRawBeta | Computes Beta value from raw signals |
| getSnpM | Computes M values after normalization of SNP data. |
| plotValidationGraph | plot of Validation Graph for determing number of components |
| SampleSet-class | S4 class object SampleSet |
| show-SampleSet-method | Show Object SampleSet |
