getRawBeta: Computes Beta value from raw signals
In GreenwoodLab/funtooNorm: Normalization Procedure for Infinium HumanMethylation450 BeadChip Kit
getRawBeta R Documentation
Computes Beta value from raw signals
Description
Computes Beta value from raw signals
Usage
getRawBeta(object, offset = 100)
## S4 method for signature 'SampleSet'
getRawBeta(object, offset = 100)
Arguments
object
object of class SampleSet
offset
default is 100 as Illumina standard
Value
a matrix containing the raw beta value for each position and each
samples
Methods (by class)
-
SampleSet: Computes Beta value from raw signals
Examples
require(minfiData)
pData(RGsetEx)$cell_type <- rep(c("type1","type2"),3)
mySampleSet=fromRGChannelSet(RGsetEx)
r=getRawBeta(mySampleSet)
GreenwoodLab/funtooNorm documentation built on April 5, 2022, 3:22 p.m.
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| getRawBeta | R Documentation |
Computes Beta value from raw signals
Description
Computes Beta value from raw signals
Usage
getRawBeta(object, offset = 100) ## S4 method for signature 'SampleSet' getRawBeta(object, offset = 100)
Arguments
object |
object of class SampleSet |
offset |
default is 100 as Illumina standard |
Value
a matrix containing the raw beta value for each position and each samples
Methods (by class)
-
SampleSet: Computes Beta value from raw signals
Examples
require(minfiData)
pData(RGsetEx)$cell_type <- rep(c("type1","type2"),3)
mySampleSet=fromRGChannelSet(RGsetEx)
r=getRawBeta(mySampleSet)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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