getNormBeta: Computes Beta values from normalized signals
In GreenwoodLab/funtooNorm: Normalization Procedure for Infinium HumanMethylation450 BeadChip Kit
getNormBeta R Documentation
Computes Beta values from normalized signals
Description
Computes Beta values from normalized signals
Usage
getNormBeta(object, offset = 100)
## S4 method for signature 'SampleSet'
getNormBeta(object, offset = 100)
Arguments
object
of type SampleSet
offset
default is 100 as Illumina standard
Value
a matrix containing beta after normalization value for each CpG
position and each samples
Methods (by class)
-
SampleSet: Computes Beta values from normalized signals
Examples
require(minfiData)
pData(RGsetEx)$cell_type <- rep(c("type1","type2"),3)
mySampleSet=fromRGChannelSet(RGsetEx)
b=getNormBeta(funtooNorm(mySampleSet))
GreenwoodLab/funtooNorm documentation built on April 5, 2022, 3:22 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| getNormBeta | R Documentation |
Computes Beta values from normalized signals
Description
Computes Beta values from normalized signals
Usage
getNormBeta(object, offset = 100) ## S4 method for signature 'SampleSet' getNormBeta(object, offset = 100)
Arguments
object |
of type SampleSet |
offset |
default is 100 as Illumina standard |
Value
a matrix containing beta after normalization value for each CpG position and each samples
Methods (by class)
-
SampleSet: Computes Beta values from normalized signals
Examples
require(minfiData)
pData(RGsetEx)$cell_type <- rep(c("type1","type2"),3)
mySampleSet=fromRGChannelSet(RGsetEx)
b=getNormBeta(funtooNorm(mySampleSet))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.