API for HCBravoLab/TreeSE
R/Bioconductor package to interactively explore and visualize single cell RNA-seq datasets with hierarhical annotations
| Global functions | |
|---|---|
| .calculate_tsne | Source code |
| .change_assignment | Source code |
| .checkRoot | Source code |
| .check_alternate | Source code |
| .check_cycle | Source code |
| .check_unique_parent | Source code |
| .collapse_tree | Source code |
| .delay_requests | Source code |
| .find_top_variable_genes | Source code |
| .generate_hierarchy_tree | Man page Source code |
| .generate_leaf_of_table | Man page |
| .generate_node_ids | Man page Source code |
| .generate_nodes_table | Man page |
| .generate_walktrap_hierarchy | Source code |
| .preprocessAndCreateTreeViz | Source code |
| .prune_tree | Source code |
| .register_all_treeviz_things | Source code |
| .rename_clusters | Source code |
| .replaceNAFeatures | Man page |
| .viewer_option_browse_fun | Source code Source code |
| .wait_until_connected | Source code |
| ClusterHierarchy | Man page Source code |
| ClusterHierarchy-class | Man page |
| EpivizTreeData | Man page |
| EpivizTreeData-class | Man page |
| TreeIndex | Man page Source code |
| TreeIndex-class | Man page |
| TreeViz | Man page Source code |
| TreeViz-class | Man page |
| TreeVizApp | Man page |
| TreeVizApp-class | Man page |
| [,TreeIndex,ANY,ANY,ANY-method | Man page |
| aggregateTree | Man page |
| aggregateTree,TreeViz-method | Man page |
| createFromSCE | Man page Source code |
| createFromSeurat | Man page Source code |
| createTreeViz | Man page Source code |
| getNodeStates | Man page |
| getNodeStates,TreeIndex-method | Man page |
| getNodes | Man page |
| getNodes,TreeIndex-method | Man page |
| plot,TreeViz,ANY-method | Man page |
| register,TreeViz-method | Man page |
| set_gene_list | Man page Source code |
| show,TreeIndex-method | Man page |
| show,TreeViz-method | Man page |
| splitAt | Man page |
| splitAt,TreeIndex-method | Man page |
| startTreeviz | Man page Source code |
