Files in HCBravoLab/TreeSE
R/Bioconductor package to interactively explore and visualize single cell RNA-seq datasets with hierarhical annotations
.Rbuildignore
.github/.gitignore
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
NAMESPACE
R/ClusterHierarchy-class.R
R/EpivizTreeData-class.R
R/TreeIndex-class.R
R/TreeIndex-methods.R
R/TreeViz-class.R
R/TreeViz-methods.R
R/TreeVizApp-class.R
R/helper-functions.R
R/startTreeViz.R
README.md
man/ClusterHierarchy-class.Rd
man/ClusterHierarchy.Rd
man/EpivizTreeData-class.Rd
man/TreeIndex-class.Rd
man/TreeIndex-methods.Rd
man/TreeIndex.Rd
man/TreeViz-class.Rd
man/TreeViz-methods.Rd
man/TreeViz.Rd
man/TreeVizApp-class.Rd
man/createFromSCE.Rd
man/createFromSeurat.Rd
man/createTreeViz.Rd
man/dot-generate_hierarchy_tree.Rd
man/dot-generate_leaf_of_table.Rd
man/dot-generate_node_ids.Rd
man/dot-generate_nodes_table.Rd
man/dot-replaceNAFeatures.Rd
man/set_gene_list.Rd
man/startTreeviz.Rd
tests/testthat.R
tests/testthat/test-TreeViz.R
tests/testthat/tests-start_treeviz.R
vignettes/ExploreTreeViz.Rmd
vignettes/images/Boxplot.png
vignettes/images/Treeviz-annotated.png
vignettes/images/Treeviz.png
vignettes/images/cell416B.png
vignettes/images/dest_boxplot_dialogue.png
vignettes/images/treeviz_agg.gif
vignettes/images/treeviz_boxplot.png
vignettes/images/treeviz_clusters.png
vignettes/images/treeviz_remove.gif
