startTreeviz: Start treeviz app and create 'TreeVizApp' object to manage...

Description Usage Arguments Value See Also Examples

View source: R/startTreeViz.R

Description

Start treeviz app and create TreeVizApp object to manage connection.

Usage

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startTreeviz(
  data = NULL,
  genes = NULL,
  top_genes = 100,
  host = "http://epiviz.cbcb.umd.edu/treeviz",
  register_function = .register_all_treeviz_things,
  delay = 2L,
  ...
)

Arguments

data

TreeViz object to explore

genes

(character vector) genes (rownames) to include in heatmap

top_genes

(integer) number of top variable genes to include in the heatmap

host

(character) host address to launch.

register_function

(function) function used to register actions and charts on the treeviz app.

delay

(integer) number of seconds to wait for application to load in browser

...

additional parameters passed to startEpiviz.

Value

An object of class TreeVizApp

See Also

TreeVizApp

Examples

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# see package vignette for example usage
app <- startTreeviz(non_interactive=TRUE, open_browser=FALSE)
app$stop_app()

HCBravoLab/TreeSE documentation built on Sept. 27, 2021, 4:19 p.m.