TreeIndex: create a new TreeIndex object

In HCBravoLab/TreeSE: R/Bioconductor package to interactively explore and visualize single cell RNA-seq datasets with hierarhical annotations

Description

create a new TreeIndex object

Usage

TreeIndex(hierarchy = NULL, feature_order = NULL)

Arguments

hierarchy	hierarchy as a data.table
feature_order	order of the tree if different from colnames

Value

a 'TreeIndex' object

Examples

library(metagenomeSeq)
data(mouseData)
counts <- MRcounts(mouseData)
hierarchy <- fData(mouseData)
tree <- TreeIndex(hierarchy)

HCBravoLab/TreeSE documentation built on Sept. 27, 2021, 4:19 p.m.