TreeIndex: create a new TreeIndex object

Description Usage Arguments Value Examples

View source: R/TreeIndex-class.R

Description

create a new TreeIndex object

Usage

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TreeIndex(hierarchy = NULL, feature_order = NULL)

Arguments

hierarchy

hierarchy as a data.table

feature_order

order of the tree if different from colnames

Value

a 'TreeIndex' object

Examples

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library(metagenomeSeq)
data(mouseData)
counts <- MRcounts(mouseData)
hierarchy <- fData(mouseData)
tree <- TreeIndex(hierarchy)

HCBravoLab/TreeSE documentation built on Sept. 27, 2021, 4:19 p.m.