Description Usage Arguments Value Examples
View source: R/helper-functions.R
Creates a 'TreeViz' object from 'Seurat'
1 2 3 4 5 6 7 | createFromSeurat(
object,
check_metadata = FALSE,
col_regex = "*snn*",
columns = NULL,
reduced_dim = c("TSNE")
)
|
object |
'Seurat' class containing cluster information at different resolutions |
check_metadata |
whether to metaData of 'Seurat' object for cluster information or not |
col_regex |
common regular expression shared across all columns with cluster information |
columns |
vector containing columns with cluster information |
reduced_dim |
Vector of Dimensionality reduction information provided in 'Seurat' object to be added in 'TreeViz' (if exists) |
'TreeViz' Object
1 2 3 4 | library(Seurat)
data(pbmc_small)
pbmc <- pbmc_small
treeviz<- createFromSeurat(pbmc, check_metadata = TRUE, reduced_dim = c("pca","tsne"))
|
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