prepare_sdm_table: Prepare SDM table.
In HMB3/nenswniche: Rapidly estimate species ranges and intersect with other layers

prepare_sdm_table

R Documentation

Prepare SDM table.

Description

'This function takes a data frame of all taxa records, And prepares a table in the 'taxa with data' (swd) format for modelling uses the Maxent algorithm. It assumes that the input df is that returned by the coord_clean_records function'

Usage

prepare_sdm_table(
  coord_df,
  taxa_list,
  site_flag,
  occ_flag,
  site_split,
  spat_out_remove,
  sdm_table_vars,
  save_run,
  read_background,
  background_points,
  save_data,
  data_path,
  country_epsg,
  world_epsg
)

Arguments

`coord_df`	SF object. Spatial DF of all taxa records returned by the coord_clean_records function
`taxa_list`	Character string - the taxa analysed
`site_split`	Logical - do you want to add sites to the table?
`spat_out_remove`	Logical - do you want to save the data frame?
`sdm_table_vars`	Character string - The enviro vars to be included in taxa models
`save_run`	Character string - append a run name to the output (e.g. 'bat_taxa')
`read_background`	Logical - Read in an additional dataframe of background points (T/F)?
`background_points`	Data.frame. DF of extra taxa records
`save_data`	Logical - do you want to save the data frame?
`data_path`	Character string - The file path used for saving the data frame
`country_epsg`	Numeric - The national projected CRS system to use (metres)
`world_epsg`	Character string - The global geographic CRS to use (decimal degrees)
`BG_points`	Logical - Do we want to include a dataframe of background points? Otherwise, BG points taken from taxa not modelled
`save_shp`	Logical - Save a shapefile of the SDM table (T/F)?
`project_path`	Path of taxa records, with spatial outlier T/F flag for each record