DeltaPlot: Plot of the dose response curves with each cell line...

In HaemAalborg/DoseR: Analysis of dose response experiments

Description

Plot of the dose response curves with each cell line presented in a panel.

Usage

DeltaPlot(A.data, 
          diff.var    = 1, 
          drug        = 1, 
          model       = "G", 
          type        = "AUC", 
          time        = "48",
          names       = NULL,
          dose.scale  = "mol/l",
          dose.logfun = "log10",
          col         = "#4F6E9F",
          reverse     = FALSE, 
          las         = 2, 
          ylab        = NULL, 
          main        = "Difference", 
          ...)

Arguments

A.data	The A.data object created by the function bgModel.
diff.var	Character indicating the variable used for separating the experiments for which the difference is to be calculated.
drug	The drug for which the difference should be calculated.
type	The summary statistic for which the difference is to be calculated.
time	The time point where the difference is to be calculated.
names	The names of the cell lines that are to plotted.
dose.scale	Character indicating the scale used for the summary statistcs. The unit is written as e.g. ug/ml to indicate micro grams per milli litre and defaults to mol/l. The unit is written as ug/ml The current implementations for multiples are: Name deca hecto kilo mega giga tera peta exa zetta yotta Prefix da h k M G T P E Z Y Factor 10^0 10^1 10^2 10^3 10^6 10^9 10^12 10^15 10^18 10^21 10^24 The current implementations for fractions are: Name deci centi milli micro nano pico femto atto zepto yocto Prefix d c m u n p f a z y Factor 10^-1 10^-2 10^-3 10^-6 10^-9 10^-12 10^-15 10^-18 10^-21 10^-24
dose.logfun	Character indicating if the concentrations should be log transformed. The possible inputs are nolog for non log transformation, log10, log2, log for log transforming with base 10, 2, and e, respectively.
col	Character vector of colours.
reverse	Logical indicater for whether or not the the number of plots per figure.
las	Logical indicater for whether or not the the number of plots per figure.
ylab	Logical indicater for whether or not the the number of plots per figure.
main	Logical indicater for whether or not the the number of plots per figure.
...	Further arguments passed on to the plot.

Value

plot of absorbance values plotted aginst time with the result of the G-model superimposed.

Author(s)

The function was written at department of haematology, Aalborg University Hospital and maintained by Steffen Falgreen.

References

Steffen Falgreen et al. Exposure time independent summary statistics for assessment of drug dependent cell line growth inhibition (2013)

See Also

plotbgModelresid

Examples

require(DoseR)
data(A.data)

HaemAalborg/DoseR documentation built on Jan. 17, 2021, 7:40 a.m.