Description Usage Arguments Value Author(s) References See Also Examples
View source: R/plotfunctions.R
Box plots of chosen summary statistics according to the specified dose reponse model.
1 2 3 4 |
A.data |
An A.data object created by the function | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
splitvar |
Character specifying a variable according to which the boxplots should be separated e.g. a column specifying the disease origin of the cell lines. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
splitvar.col |
Specify the colour used for each element of splitvar. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
col.all |
Vector of colours. The colours are used from left to right. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
model |
Character specifying which dose response model the boxplot should be produced for. Currently the follwing models are implemented | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
type |
Character indicating the summary statistic used in the plot. This can be either of | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
names |
Character vector specifying the names of the cell lines that are to be plotted. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
drug |
Character specifying the drug to be plotted. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
time |
character or numeric indicator for which time point the plot is based upon. Not applicable for the | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
main |
The main title for the plot | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ylab |
The label for the y-axis | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
clean.names |
character specifying a repetitive part of cell line names that should be remove. e.g. " - inHS" if the cell lines are named as "cell.line.name - inHS". | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
plot.order |
character vector of cell line names specifying the order of the boxplots. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
dose.scale |
Character indicating the scale used for concentrations when estimating the isotonic regression and the summary statistcs. The unit is written as e.g. ug/ml to indicate micro grams per milli litre and defaults to
The current implementations for fractions are:
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dose.logfun |
Character indicating if the concentrations should be log transformed. The possible inputs are | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
... |
Further arguments passed along to boxplot. |
Box plot of bootstrapped summary statistics.
The function was written at department of haematology, Aalborg University Hospital and maintained by Steffen Falgreen.
Steffen Falgreen et al. Exposure time independent summary statistics for assessment of drug dependent cell line growth inhibition (2013)
CI
,DRdataBoxplot
,plot.DRdata
,plot.growthModel
,plotGrid
1 2 3 4 5 6 7 8 9 10 11 12 | require(DoseR)
data(A.data)
DRdataBoxplot(A.data, type = "AUC", model = "G",
splitvar = "disease", col.all = c("#71965A", "#4F6E9F"),
drug = "Rituximab",
time = 48)
DRdataBoxplot(A.data, type = "AUC", model = "G",
splitvar = "disease", col.all = c("#71965A", "#4F6E9F"),
drug = "Doxorubicin",
time = 48)
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