README.md
In HailinWei98/SCREEN: What the Package Does (One Line, Title Case)
SCREEN
SCREEN(Single-cell CRISPR scREen data analyses and pErturbation modeliNg) is a pipeline to visualize the quality of single-cell CRISPR screens RNA-seq/ATAC-seq datasets. SCREEN has integrated three R functions: scMAGeCK_lr, Mixscape and plot function of cicero. These functions are used to estimate the regulatory score between perturbations and genes, estimate the perturbation efficiency and visualize enhancer regulatory potential, respectively.
Document
We are hosting SCREEN documentation, instruction and tutorials at SCREEN Website.
Dependency
R >= 4.0.3
Seurat >= 4.0.3
scMAGeCK
snakemake
mixtools
Installation
$ R
> library(devtools)
> install_github("HailinWei98/SCREEN")
HailinWei98/SCREEN documentation built on June 15, 2022, 12:21 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
SCREEN
SCREEN(Single-cell CRISPR scREen data analyses and pErturbation modeliNg) is a pipeline to visualize the quality of single-cell CRISPR screens RNA-seq/ATAC-seq datasets. SCREEN has integrated three R functions: scMAGeCK_lr, Mixscape and plot function of cicero. These functions are used to estimate the regulatory score between perturbations and genes, estimate the perturbation efficiency and visualize enhancer regulatory potential, respectively.
Document
We are hosting SCREEN documentation, instruction and tutorials at SCREEN Website.
Dependency
R >= 4.0.3
Seurat >= 4.0.3
scMAGeCK
snakemake
mixtools
Installation
$ R
> library(devtools)
> install_github("HailinWei98/SCREEN")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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