Man pages for HegemanLab/ProteinTurnover
Protein Turnover Experiment Analysis
| addEICs | Get EIC data on specified sequences |
| calcEnv | Calculate natural abundance of isotopes over several... |
| getPars | Get output from a list of completed fits |
| isocounts | Sample Count Data |
| isodata | Sample Peptide/Isotope Data |
| isoincorp | Sample Peptide/Isotope Data |
| makeData | Make data frame from a sequence |
| makeSequence | Extract peptide sequence information for a single sequence... |
| makeSequenceHTML | Make HTML output for a list of fits |
| makeSequences | Extract peptide sequence information from a data file |
| mclapply.progress | lapply over multiple cores with progress bar |
| parmatrix | Gets the fitted parameters from a pepfit object |
| parmatrix.byix | Create a function that will set up a parmatrix |
| parsetup | Parameter setup functions |
| pepcompare | Compare two fitted models |
| pepcurve | Fit an exponential curve to fitted pi, r, and alpha values |
| pepfit | Fit a model |
| pepfittest | Test a pepfit |
| pepsim | Create a set of simulated data |
| pepsimtest | Test a set of simulated data |
| rawToRDS | Convert raw mzXML files to Rdata files |
| readScaffoldFile | Read Scaffold file |
| relAbForTimes | Relative Abundance from Counts, for multiple time points |
| relAbFromCounts | Relative Abundance from Counts |
| score | Get a score for a given fit |
| summary.pepfit | Summarize and print results from a pepfit |
