makeSequences: Extract peptide sequence information from a data file
In HegemanLab/ProteinTurnover: Protein Turnover Experiment Analysis

Extract peptide sequence information from a data file

makeSequences(d, isotope, confidence.level, time.zero, time.unit, mz.tol,
  rt.tol, extra.channels, aa.table = aaTable, verbose = TRUE)

getData(seq)

`d`	the data file, from reading the Scaffold or ProteinPilot files
`isotope`	the desired isotope
`confidence.level`	the desired peptide identification confidence value
`time.zero`	the time to treat as time "zero"
`time.unit`	the name of the time unit, for display
`mz.tol`	the m/z window
`rt.tol`	the retention time window
`extra.channels`	how many extra channels to include
`aa.table`	the table to take element information from
`verbose`	if verbose output desired
`seq`	a sequence