addEICs: Get EIC data on specified sequences

Description Usage Arguments Value

View source: R/protein_preparation.R

Description

Get EIC data on specified sequences. This extracts the raw eic values, not the profiled values in class.

Usage

1
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addEICs(dat, files, type = c("mzXML", "rds", "obj"), times, dir,
  verbose = TRUE)

Arguments

dat

peptide sequences to extract, from makeSequences

files

data files to read, or optionally, the objects themselves

type

the type of data file, or R object

times

the data collection times

dir

the directory the files are in

verbose

if verbose output desired

Value

this returns a list of lists, one for each protein, each with a list for each sequence of that protein, each with

ID

(a single character string)

Sequence

(a single character string)

Times
Elements
data

data frame with: MZ: the mz, RT: the retention times, Count: matrix with columns for channels and rows for retention times.


HegemanLab/ProteinTurnover documentation built on May 6, 2019, 11:50 p.m.