API for HelenaLC/ddSingleCell
Multi-sample multi-group scRNA-seq data analysis tools

Global functions
.DESeq2 Source code
.check_arg_assay Source code
.check_args_aggData Source code
.check_args_mmDS Source code
.check_args_pbDS Source code
.check_args_pbHeatmap Source code
.check_args_simData Source code
.check_frq Source code
.check_pbs Source code
.check_res Source code
.check_sce Source code
.edgeR Source code
.filter_matrix Source code
.filter_sce Source code
.fit_bglmer Source code
.fit_lmer Source code
.fit_nbinom Source code
.get_clusters_from_phylo Source code
.get_ns Source code
.impute_shared_type_genes Source code
.impute_type_genes Source code
.limma Source code
.limma_trend Source code
.limma_voom Source code
.make_ei Source code
.mm_dream Man page Source code
.mm_dream2 Man page Source code
.mm_eBayes Source code
.mm_glmm Man page Source code
.mm_hybrid Source code
.mm_nbinom Source code
.mm_poisson Source code
.mm_vst Man page Source code
.n_cells Source code
.nb Source code
.p_adj_global Source code
.pb Source code
.prep_cd Source code
.read_branch Source code
.res_df Source code
.sample_cell_md Source code
.sample_gene_inds Source code
.scale Source code
.sim Source code
.split_cells Source code
.toySCE Source code
.update_sce Source code
.vst_DESeq2 Source code
.vst_sctransform Source code
.z_norm Source code
aggregateData Man page Source code
calcExprFreqs Man page Source code
data Man page
example_sce Man page
mmDS Man page Source code
pbDS Man page Source code
pbFlatten Man page Source code
pbHeatmap Man page Source code
pbMDS Man page Source code
prepSCE Man page Source code
prepSim Man page Source code
resDS Man page Source code
simData Man page Source code
HelenaLC/ddSingleCell documentation built on June 23, 2022, 3:33 a.m.