pbFlatten: pbFlatten Flatten pseudobulk SCE
In HelenaLC/ddSingleCell: Multi-sample multi-group scRNA-seq data analysis tools
pbFlatten R Documentation
pbFlatten
Flatten pseudobulk SCE
Description
Flattens a pseudobulk SingleCellExperiment
as returned by aggregateData such that all cell subpopulations
are represented as a single assay.
Usage
pbFlatten(pb, normalize = TRUE)
Arguments
pb
a pseudobulk SingleCellExperiment
as returned by aggregateData, with different subpopulations as assays.
normalize
logical specifying whether to compute a logcpm assay.
Value
a SingleCellExperiment.
Examples
data(example_sce)
library(SingleCellExperiment)
pb_stack <- aggregateData(example_sce)
(pb_flat <- pbFlatten(pb_stack))
ncol(pb_flat) == ncol(pb_stack)*length(assays(pb_stack))
HelenaLC/ddSingleCell documentation built on Feb. 21, 2023, 4:31 p.m.
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| pbFlatten | R Documentation |
pbFlatten Flatten pseudobulk SCE
Description
Flattens a pseudobulk SingleCellExperiment
as returned by aggregateData such that all cell subpopulations
are represented as a single assay.
Usage
pbFlatten(pb, normalize = TRUE)
Arguments
pb |
a pseudobulk |
normalize |
logical specifying whether to compute a |
Value
a SingleCellExperiment.
Examples
data(example_sce) library(SingleCellExperiment) pb_stack <- aggregateData(example_sce) (pb_flat <- pbFlatten(pb_stack)) ncol(pb_flat) == ncol(pb_stack)*length(assays(pb_stack))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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