incl/topdom_partitions.R
In HenrikBengtsson/TopDomStudy: TopDom Study by Segal et al.
dataset <- "human,HAP1,unique"
pathname <- system.file("compiledData", sprintf("%s,chr=22.rds", dataset), package = "TopDomStudy")
reads <- read_rds(pathname)
print(reads)
td <- topdom_partitions(reads, bin_size = 100e3, rho = 0.5, nsamples = 5L,
partition_by = "cells_by_half",
dataset = dataset, verbose = TRUE)
HenrikBengtsson/TopDomStudy documentation built on May 14, 2021, 1:49 p.m.
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dataset <- "human,HAP1,unique"
pathname <- system.file("compiledData", sprintf("%s,chr=22.rds", dataset), package = "TopDomStudy")
reads <- read_rds(pathname)
print(reads)
td <- topdom_partitions(reads, bin_size = 100e3, rho = 0.5, nsamples = 5L,
partition_by = "cells_by_half",
dataset = dataset, verbose = TRUE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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