Files in HenrikBengtsson/TopDomStudy
TopDom Study by Segal et al.
.Rbuildignore
.gitignore
.travis.yml
CONDUCT.md
DESCRIPTION
Makefile
NAMESPACE
NEWS
R/as_TopDomData.R
R/compile_by_organism.R
R/extract_domain_length_limits.R
R/gg.R
R/hic_bin.R
R/import_topdom_overlap_scores.R
R/import_topdom_regions.R
R/maybe.R
R/overlap_score_summary_grid.R
R/overlap_score_summary_vs_bin_size.R
R/overlap_score_summary_vs_fraction.R
R/overlap_score_summary_vs_tad_length.R
R/overlap_scores_partitions.R
R/overlap_scores_summary.R
R/package.R
R/read_rds.R
R/read_topdom_overlap_scores.R
R/read_topdom_regions.R
R/sample_partitions.R
R/sample_partitions_by_cells.R
R/sample_partitions_by_half.R
R/self_vignette_engine.R
R/split_by_celltype.R
R/split_by_celltype_chromosome.R
R/topdom_partitions.R
R/unique_by.R
R/utils.R
R/zzz.R
README.md
appveyor.yml
incl/gg_overlap_score_summary_vs_nnn.R
incl/hic_bin.R
incl/overlap_score_vs_length.R
incl/topdom_partitions.R
inst/WORDLIST
inst/bin/overlap_score_summary_vs_nnn.R
inst/bin/overlap_score_summary_vs_nnn.pbs
inst/compiledData/human,HAP1,unique,chr=1.rds
inst/compiledData/human,HAP1,unique,chr=10.rds
inst/compiledData/human,HAP1,unique,chr=11.rds
inst/compiledData/human,HAP1,unique,chr=12.rds
inst/compiledData/human,HAP1,unique,chr=13.rds
inst/compiledData/human,HAP1,unique,chr=14.rds
inst/compiledData/human,HAP1,unique,chr=15.rds
inst/compiledData/human,HAP1,unique,chr=16.rds
inst/compiledData/human,HAP1,unique,chr=17.rds
inst/compiledData/human,HAP1,unique,chr=18.rds
inst/compiledData/human,HAP1,unique,chr=19.rds
inst/compiledData/human,HAP1,unique,chr=2.rds
inst/compiledData/human,HAP1,unique,chr=20.rds
inst/compiledData/human,HAP1,unique,chr=21.rds
inst/compiledData/human,HAP1,unique,chr=22.rds
inst/compiledData/human,HAP1,unique,chr=23.rds
inst/compiledData/human,HAP1,unique,chr=24.rds
inst/compiledData/human,HAP1,unique,chr=25.rds
inst/compiledData/human,HAP1,unique,chr=3.rds
inst/compiledData/human,HAP1,unique,chr=4.rds
inst/compiledData/human,HAP1,unique,chr=5.rds
inst/compiledData/human,HAP1,unique,chr=6.rds
inst/compiledData/human,HAP1,unique,chr=7.rds
inst/compiledData/human,HAP1,unique,chr=8.rds
inst/compiledData/human,HAP1,unique,chr=9.rds
inst/notes.md
inst/scripts/compile_by_organism.R
inst/scripts/download.sh
inst/scripts/split_by_celltype.R
inst/scripts/split_by_celltype_chromosome.R
inst/vignettes-static/TopDomStudy-3.Overview_of_Ramani_Data.md.rsp
man/TopDomStudy.Rd
man/Try.Rd
man/as_TopDomData.Rd
man/compile_by_organism.Rd
man/crc32.Rd
man/gg_overlap_score_summary_vs_fraction.Rd
man/grapes-set-help-grapes.Rd
man/hic_bin.Rd
man/import_topdom_overlap_scores.Rd
man/import_topdom_regions.Rd
man/maybe.Rd
man/overlap_score_summary.Rd
man/overlap_score_summary_grid.Rd
man/overlap_score_summary_vs_bin_size.Rd
man/overlap_score_summary_vs_fraction.Rd
man/overlap_scores_partitions.Rd
man/read_rds.Rd
man/read_topdom_overlap_scores.Rd
man/read_topdom_regions.Rd
man/sample_partitions.Rd
man/sample_partitions_by_cells.Rd
man/sample_partitions_by_cells_by_half.Rd
man/sample_partitions_by_half.Rd
man/sample_partitions_similar_weights.Rd
man/sample_partitions_similar_weights_by_half.Rd
man/save_rds.Rd
man/split_by_celltype.Rd
man/split_by_celltype_chromosome.Rd
man/stop_if_not.Rd
man/topdom_partitions.Rd
man/unique_by.Rd
tests/hic_bin.R
tests/incl/end.R
tests/incl/start,load-only.R
tests/incl/start.R
tests/overlap_score_partitions.R
tests/overlap_score_partitions_2.R
tests/overlap_score_summary_grid.R
tests/overlap_score_summary_vs_bin_size.R
tests/overlap_score_summary_vs_fraction.R
tests/read_rds.R
tests/sample_partitions_by_half.R
tests/topdom_partitions.R
tests/unique_by.R
tests/zzz.R
vignettes/TopDomStudy-1.data-preprocessing.md
vignettes/TopDomStudy-2.overlap-scores.md
vignettes/TopDomStudy-3.Overview_of_Ramani_Data.md
vignettes/incl/clean.css
