MultiArrayUnitModel: The MultiArrayUnitModel class

In HenrikBengtsson/aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets

The MultiArrayUnitModel class

Description

Package: aroma.affymetrix
Class MultiArrayUnitModel

Object
~~|
~~+--ParametersInterface
~~~~~~~|
~~~~~~~+--Model
~~~~~~~~~~~~|
~~~~~~~~~~~~+--UnitModel
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--MultiArrayUnitModel

Directly known subclasses:
AffineCnPlm, AffinePlm, AffineSnpPlm, AvgCnPlm, AvgPlm, AvgSnpPlm, ExonRmaPlm, HetLogAddCnPlm, HetLogAddPlm, HetLogAddSnpPlm, MbeiCnPlm, MbeiPlm, MbeiSnpPlm, ProbeLevelModel, RmaCnPlm, RmaPlm, RmaSnpPlm

public abstract static class MultiArrayUnitModel
extends UnitModel

This abstract class represents a unit model that fits one model per unit based on signals for all arrays in the data set. The nature of a multi-array unit model is that all arrays must be available at the time of the fit and the estimated parameters will depend on the data from all arrays. Thus, if the signals in one array changes the model has to be refitted.

Usage

MultiArrayUnitModel(..., listOfPriors=NULL)

Arguments

...	Arguments passed to UnitModel.
listOfPriors	A list of priors to be used when fitting the model.

Fields and Methods

Methods:

	getListOfPriors	-
	setListOfPriors	-

Methods inherited from UnitModel:
findUnitsTodo, getAsteriskTags, getFitSingleCellUnitFunction, getParameters

Methods inherited from Model:
as.character, fit, getAlias, getAsteriskTags, getDataSet, getFullName, getName, getPath, getRootPath, getTags, setAlias, setTags

Methods inherited from ParametersInterface:
getParameterSets, getParameters, getParametersAsString

Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis

Author(s)

Henrik Bengtsson

HenrikBengtsson/aroma.affymetrix documentation built on Feb. 20, 2024, 9:07 p.m.