extractAffyBatch.AffymetrixCelSet: Extracts an in-memory AffyBatch object from the CEL set

In HenrikBengtsson/aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets

Extracts an in-memory AffyBatch object from the CEL set

Description

Extracts an in-memory AffyBatch object from the CEL set. Note that any modifications done to the extract object will not be reflected in the original CEL set.

Usage

## S3 method for class 'AffymetrixCelSet'
extractAffyBatch(this, ..., verbose=FALSE)

Arguments

...	Argument passed to ReadAffy() (read.affybatch).
verbose	See Verbose.

Details

Since the affy package is making use of special CDF environment packages, this method will warn if the needed package is missing and explain that affy will later try to download and install it automatically.

Value

Returns an AffyBatch-class object.

Author(s)

Henrik Bengtsson

See Also

Internally read.affybatch is used to read the data. For more information see AffymetrixCelSet.

HenrikBengtsson/aroma.affymetrix documentation built on Feb. 20, 2024, 9:07 p.m.