getAlleleCellPairs.AffymetrixCdfFile: Gets the cell indices of allele pairs

In HenrikBengtsson/aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets

Gets the cell indices of allele pairs

Description

Gets the cell indices of allele pairs in units of type "genotyping" with 2 or 4 unit groups.

Usage

## S3 method for class 'AffymetrixCdfFile'
getAlleleCellPairs(this, units=NULL, stratifyBy=c("pm", "pmmm", "mm"), force=FALSE, ...,
  verbose=FALSE)

Arguments

units	A integer vector of units to query. If NULL, all units are considered.
stratifyBy	A character string specifying what type of probes to return.
...	Not used.
verbose	A logical or a Verbose object.

Value

Returns a Nx2 integer matrix of cell indices, where each row is a (PMA, PMB) probe pair.

Author(s)

Henrik Bengtsson

See Also

For more information see AffymetrixCdfFile.

HenrikBengtsson/aroma.affymetrix documentation built on Feb. 20, 2024, 9:07 p.m.