plotDensity.AffymetrixCelFile: Plots the density of the probe signals on the array

In HenrikBengtsson/aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets

Plots the density of the probe signals on the array

Description

Plots the density of the probe signals on the array.

Usage

## S3 method for class 'AffymetrixCelFile'
plotDensity(this, subset=NULL, types=NULL, ..., xlim=c(0, 16), xlab=NULL,
  ylab="density (integrates to one)", log=TRUE, annotate=TRUE, verbose=FALSE)

Arguments

subset	The subset of probes to considered before any filtering by probe type is applied. If a vector of doubles, the cell indices. If a scalar double in [0,1], the fraction of cells, which can be used to speed up the plotting if approximate densities are acceptable. if NULL, all cells are considered.
types	The type of probes to include, e.g. "all", "pmmm", "pm", and "mm".
...	Additional arguments passed to plotDensity.numeric.
xlim	The range on the x axis.
xlab,ylab	The labels on the x and the y axes.
log	If TRUE, the density of the log (base 2) values are used, otherwise the non-logged values.
verbose	A logical or a Verbose object.

Value

Returns nothing.

Author(s)

Henrik Bengtsson

See Also

For more information see AffymetrixCelFile.

HenrikBengtsson/aroma.affymetrix documentation built on Feb. 20, 2024, 9:07 p.m.