plotDensity.GenomeInformation: Plots the density of SNPs for a given chromosome

In HenrikBengtsson/aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets

Plots the density of SNPs for a given chromosome

Description

Plots the density of SNPs for a given chromosome.

Usage

## S3 method for class 'GenomeInformation'
plotDensity(this, chromosome, ..., adjust=1/20, xlab=NULL, main=NULL, annotate=TRUE)

Arguments

chromosome	The chromsome to be displayed.
...	Additional arguments passed to *getPositions().
adjust	A bandwidth parameter for the density estimator.
xlab	The label on the x-axis. If NULL, a default will generated.
main	The title of the plot. If NULL, a default will generated.
annotate	If TRUE, the plot is annotated with extra information.

Value

Returns (invisibly) the estimated density.

See Also

For more information see GenomeInformation.

HenrikBengtsson/aroma.affymetrix documentation built on Feb. 20, 2024, 9:07 p.m.