inst/testScripts/system/chipTypes/HuEx-1_0-st-v2/01a.downloadAnnotationData.R

In HenrikBengtsson/aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets

library("aroma.core")
verbose <- Arguments$getVerbose(-8, timestamp=TRUE)
ar <- AromaRepository(verbose=TRUE)

verbose && enter(verbose, "Downloading annotation data")

chipType <- "HuEx-1_0-st-v2"
verbose && cat(verbose, "Chip type: ", chipType)

pathname <- downloadCDF(ar, chipType)
verbose && cat(verbose, "CDF: ", pathname)

pathname <- downloadACS(ar, chipType, tags=".*")
verbose && cat(verbose, "ACS: ", pathname)

pathname <- downloadCDF(ar, chipType, tags="coreR3,A20071112,EP")
verbose && cat(verbose, "CDF: ", pathname)

pathname <- downloadCDF(ar, chipType, tags="fullR3,A20071112,EP")
verbose && cat(verbose, "CDF: ", pathname)

#pathname <- downloadCDF(ar, chipType, tags="extendedR3,A20071112,EP")
#verbose && cat(verbose, "CDF: ", pathname)

verbose && exit(verbose)