inst/testScripts/system/chipTypes/Mapping10K_Xba142/21.doCRMAv2,CBS.R
In HenrikBengtsson/aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets
library("aroma.affymetrix")
verbose <- Arguments$getVerbose(-4, timestamp=TRUE)
dataSet <- "GSE8605"
chipType <- "Mapping10K_Xba142"
dsT <- doCRMAv2(dataSet, chipType=chipType, verbose=verbose)
print(dsT)
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# CBS
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
segB <- CbsModel(dsT)
print(segB)
# Try to segment
fit(segB, arrays=1:2, chromosomes=19, verbose=verbose)
HenrikBengtsson/aroma.affymetrix documentation built on Feb. 20, 2024, 9:07 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
library("aroma.affymetrix")
verbose <- Arguments$getVerbose(-4, timestamp=TRUE)
dataSet <- "GSE8605"
chipType <- "Mapping10K_Xba142"
dsT <- doCRMAv2(dataSet, chipType=chipType, verbose=verbose)
print(dsT)
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# CBS
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
segB <- CbsModel(dsT)
print(segB)
# Try to segment
fit(segB, arrays=1:2, chromosomes=19, verbose=verbose)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.