findSetupFiles.ExperimentalSetup: Locates cDNA microarray experiment setup files

Description Usage Arguments Value Author(s) See Also Examples

Description

Locates cDNA microarray experiment setup files and returns a list of File object, which can be used by the static read() method in this class. By default it searches the current directory, but it can search any number of directories and recursively to an optimal depth.

Any file with the extension ".setup" is matched. The files are not tried to be read.

Usage

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Arguments

paths

Vector of character strings or list of File objects specifying which directories to be searched.

recursive

If \codeTRUE, all subdirectories will also be search. If \codeFALSE, only the specified directory will be searched. If an integer is given, it specifies the maximum depth of the directory structure to be search; recursive=0 and recursive=FALSE give the same results.

Value

Returns a list of filenames pointing to the setup files found.

Author(s)

Henrik Bengtsson (http://www.braju.com/R/)

See Also

For more information see ExperimentalSetup.

Examples

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   files <- ExperimentalSetup$findSetupFiles(system.file("misc", package="aroma"))
   print(files)
   for (file in files) {
     setup <- ExperimentalSetup$read(file)
     print(setup)
   }

HenrikBengtsson/aroma documentation built on May 7, 2019, 12:56 a.m.