API for HenrikBengtsson/aroma
An R Object-oriented Microarray Analysis package

Global functions
AFilter Man page
AcceptFilter Man page
AcceptFilter.getIndex Man page
AffineModelFit Man page
Analyzer Man page
AndFilter Man page
AndFilter.getIndex Man page
Array Man page
BFilter Man page
BMAData Man page
DesignMatrix Man page
DfFilter Man page
ExperimentalSetup Man page
ExperimentalSetup.findSetupFiles Man page
ExperimentalSetup.read Man page
ExpressionData Man page
FieldFilter Man page
FieldFilter.getIndex Man page
Filter Man page
Filter.changeInput Man page
Filter.getIndex Man page
Filter.getInput Man page
Filter.getParameter Man page
Filter.getVisible Man page
Filter.highlight Man page
Filter.setParameter Man page
Filter.setVisible Man page
Filter.text Man page
First.lib Source code
GSRArray Man page
GalLayout Man page
GalLayout.read Man page
GeneAcceptFilter Man page
GeneGroups Man page
GeneGroups.getDuplicates Man page
GeneGroups.getNames Man page
GeneGroups.getQuadruplicates Man page
GeneGroups.getReplicates Man page
GeneGroups.getSizes Man page
GeneGroups.getSpots Man page
GeneGroups.getTriplicates Man page
GeneGroups.nbrOfGroups Man page
GenePixData Man page
GenePixData.convertFieldNames Man page
GenePixData.getArea Man page
GenePixData.getBackgroundSD Man page
GenePixData.getChannelNames Man page
GenePixData.getForegroundSD Man page
GenePixData.getForegroundSE Man page
GenePixData.getRawData Man page
GenePixData.getSpotPosition Man page
GenePixData.plotSpatial Man page
GenePixData.read Man page
GenePixData.readHeader Man page
GenePixData.validateArgumentChannels Man page
GenePixData.write Man page
GeneRejectFilter Man page
GeneReplicateSlideArray Man page
GeneSlideArray Man page
ImaGeneData Man page
ImaGeneData.getRawData Man page
ImaGeneData.getSpotPosition Man page
ImaGeneData.read Man page
ImaGeneData.write Man page
Layout Man page
Layout.equals Man page
Layout.getId Man page
Layout.getIndex Man page
Layout.getIndices Man page
Layout.getLocation Man page
Layout.getName Man page
Layout.getPosition Man page
Layout.getPrintorder Man page
Layout.gridSize Man page
Layout.indexOf Man page
Layout.nbrOfColumns Man page
Layout.nbrOfGrids Man page
Layout.nbrOfRows Man page
Layout.nbrOfSpots Man page
Layout.read Man page
Layout.set Man page
Layout.setId Man page
Layout.setName Man page
Layout.size Man page
Layout.toPrintorderMatrix Man page
Layout.toXYMatrix Man page
Layout.write Man page
LayoutGroups Man page
MAData Man page
MAData.as.RGData Man page
MAData.estimateMACurve Man page
MAData.getAdjustedSpotVariability Man page
MAData.getColors Man page
MAData.getGeneVariability Man page
MAData.getMOR Man page
MAData.getMOR2003a Man page
MAData.loessQuantile Man page
MAData.mean Man page
MAData.normalizeAcrossSlides Man page
MAData.normalizeAffine Man page
MAData.normalizeAffineShift Man page
MAData.normalizeCurveFit Man page
MAData.normalizeLogRatioShift Man page
MAData.normalizeWithinSlide Man page
MAData.plotMvsM Man page
MAData.shift Man page
MAData.swapDyes Man page
MAData.topSpots Man page
MAData.var Man page
MFilter Man page
Matrix Man page
MicroarrayArray Man page
MicroarrayData Man page
MicroarrayData.addFlag Man page
MicroarrayData.append Man page
MicroarrayData.as.data.frame Man page
MicroarrayData.boxplot Man page
MicroarrayData.clearFlag Man page
MicroarrayData.equals Man page
MicroarrayData.extract Man page
MicroarrayData.getChannelNames Man page
MicroarrayData.getExtra Man page
MicroarrayData.getFieldNames Man page
MicroarrayData.getFlag Man page
MicroarrayData.getGeneSlideReplicateIndex Man page
MicroarrayData.getLabel Man page
MicroarrayData.getLayout Man page
MicroarrayData.getSlideNames Man page
MicroarrayData.hasLayout Man page
MicroarrayData.highlight Man page
MicroarrayData.hist Man page
MicroarrayData.isSaturated Man page
MicroarrayData.keepSlides Man page
MicroarrayData.keepSpots Man page
MicroarrayData.listFlags Man page
MicroarrayData.lowessCurve Man page
MicroarrayData.nbrOfFields Man page
MicroarrayData.nbrOfSlides Man page
MicroarrayData.nbrOfSpots Man page
MicroarrayData.normalizePlatewise Man page
MicroarrayData.plot Man page
MicroarrayData.plotDensity Man page
MicroarrayData.plotPrintorder Man page
MicroarrayData.plotSpatial Man page
MicroarrayData.plotSpatial3d Man page
MicroarrayData.plotXY Man page
MicroarrayData.read Man page
MicroarrayData.removeSlides Man page
MicroarrayData.removeSpots Man page
MicroarrayData.select Man page
MicroarrayData.setExtra Man page
MicroarrayData.setFlag Man page
MicroarrayData.setLabel Man page
MicroarrayData.setLayout Man page
MicroarrayData.setProbeWeights Man page
MicroarrayData.setSaturated Man page
MicroarrayData.setSlideNames Man page
MicroarrayData.size Man page
MicroarrayData.str Man page
MicroarrayData.subplots Man page
MicroarrayData.summary Man page
MicroarrayData.text Man page
MicroarrayData.validateArgumentGroupBy Man page
MicroarrayData.validateArgumentSlide Man page
MicroarrayData.validateArgumentSlides Man page
MicroarrayData.validateArgumentWeights Man page
MicroarrayData.write Man page
MicroarrayWeights Man page
MicroarrayWeights.unite Man page
MultiwayArray Man page
Non-documented objects Man page
NotFilter Man page
OrFilter Man page
OrFilter.getIndex Man page
ParallelFilter Man page
ParallelFilter.changeInput Man page
ParallelFilter.getInput Man page
PlateGroups Man page
PrintdipGroups Man page
PrinttipGroups Man page
ProbeWeights Man page
QuantArrayData Man page
QuantArrayData.getRawData Man page
QuantArrayData.getSpotPosition Man page
QuantArrayData.plotSpatial Man page
QuantArrayData.read Man page
QuantArrayData.readOneFile Man page
QuantArrayData.write Man page
RGData Man page
RGData.as.MAData Man page
RGData.calibrateMultiscan Man page
RGData.fitMultiscanAffine Man page
RGData.getColors Man page
RGData.getLogIntensities Man page
RGData.getLogRatios Man page
RGData.mean Man page
RGData.normalizeAffine Man page
RGData.normalizeCurveFit Man page
RGData.shift Man page
RGData.swapDyes Man page
RGData.var Man page
RawData Man page
RawData.getBackground Man page
RawData.getColors Man page
RawData.getForeground Man page
RawData.getSignal Man page
RawData.shift Man page
RawData.swapDyes Man page
RejectFilter Man page
Replicates Man page
SEFilter Man page
SMA Man page
SMA.as.RG Man page
SMA.as.layout Man page
SSMatrix Man page
ScanAlyze20Data Man page
ScanAlyze20Data.getSpotPosition Man page
ScanAlyze20Data.read Man page
ScanAlyze20Data.write Man page
ScanAlyzeData Man page
ScanAlyzeData.getRawData Man page
ScanAlyzeData.getSpotPosition Man page
ScanAlyzeData.plotSpatial Man page
ScanAlyzeData.read Man page
ScanAlyzeData.write Man page
SerialFilter Man page
SerialFilter.changeInput Man page
SerialFilter.getInput Man page
SignalWeights Man page
SignalWeights.fromSaturatedSignals Man page
SlideColumnGroups Man page
SlideRowGroups Man page
SpotData Man page
SpotData.getForegroundSD Man page
SpotData.getForegroundSE Man page
SpotData.getRawData Man page
SpotData.getSpotPosition Man page
SpotData.plotSpatial Man page
SpotData.read Man page
SpotData.write Man page
SpotPosition Man page
SpotPosition.as.character Man page
SpotPosition.as.data.frame Man page
SpotPosition.getAspectRatio Man page
SpotPosition.getBottomEdge Man page
SpotPosition.getDistancesTo Man page
SpotPosition.getLeftEdge Man page
SpotPosition.getMaxHeight Man page
SpotPosition.getMaxWidth Man page
SpotPosition.getRightEdge Man page
SpotPosition.getTopEdge Man page
SpotPosition.nbrOfSlides Man page
SpotPosition.nbrOfSpots Man page
SpotPosition.plot Man page
SpotPosition.points Man page
SpotPosition.size Man page
SpotPosition.write Man page
SpotSlideArray Man page
SpotfinderData Man page
SpotfinderData.getRawData Man page
SpotfinderData.plotSpatial Man page
SpotfinderData.read Man page
SpotfinderData.readOneFile Man page
SpotfinderData.write Man page
SuperGroups Man page
TFilter Man page
TMAData Man page
Weights Man page
[.MicroarrayArray Man page
[<-.MicroarrayArray Man page
addFlag Man page
addFlag,MicroarrayData-method Man page
addFlag.MicroarrayData Man page Man page
anonymize Man page
anonymize.GenePixData Man page
anonymize.ImaGeneData Man page
anonymize.Layout Man page
anonymize.QuantArrayData Man page
append Man page
append,MicroarrayData-method Man page
append.GenePixData Man page
append.MicroarrayData Man page Man page
append.ScanAlyzeData Man page
append.SpotData Man page
append.SpotfinderData Man page
append.default Man page
apply Man page
apply.GSRArray Man page
apply.LayoutGroups Man page
apply.MultiwayArray Man page
apply.default Man page
applyGenewise Man page
applyGenewise.MicroarrayData Man page
applyGroupwise Man page
applyGroupwise.MicroarrayData Man page
applyPlatewise Man page
applyPlatewise.MicroarrayData Man page
applyPrintdipwise Man page
applyPrintdipwise.MicroarrayData Man page
applyPrinttipwise Man page
applyPrinttipwise.MicroarrayData Man page
aroma Man page
aroma-package Man page
as.BMAData Man page
as.BMAData.BMAData Man page
as.BMAData.MAData Man page
as.BMAData.default Man page
as.DataFrame Man page
as.DataFrame.Matrix Man page
as.GeneReplicateSlideArray Man page
as.GeneReplicateSlideArray.MicroarrayArray Man page
as.GeneSlideArray Man page
as.GeneSlideArray.MicroarrayArray Man page
as.Layout Man page
as.Layout.Layout Man page
as.Layout.default Man page
as.MAData Man page
as.MAData,RGData-method Man page
as.MAData.MAData Man page
as.MAData.RGData Man page Man page
as.MAData.default Man page
as.RG Man page
as.RG,SMA-method Man page
as.RG.SMA Man page Man page
as.RGData Man page
as.RGData,MAData-method Man page
as.RGData.MAData Man page Man page
as.RGData.RGData Man page
as.RGData.RawData Man page
as.RGData.default Man page
as.RawData Man page
as.RawData.GenePixData Man page
as.RawData.ImaGeneData Man page
as.RawData.MAData Man page
as.RawData.QuantArrayData Man page
as.RawData.RGData Man page
as.RawData.RawData Man page
as.RawData.ScanAlyzeData Man page
as.RawData.SpotData Man page
as.RawData.SpotfinderData Man page
as.RawData.default Man page
as.SpotSlideArray Man page
as.SpotSlideArray.MicroarrayArray Man page
as.TMAData Man page
as.TMAData.MAData Man page
as.TMAData.TMAData Man page
as.TMAData.default Man page
as.character,SpotPosition-method Man page
as.character.AffineModelFit Man page
as.character.BMAData Man page
as.character.ExperimentalSetup Man page
as.character.Filter Man page
as.character.GSRArray Man page
as.character.GeneAcceptFilter Man page
as.character.GeneGroups Man page
as.character.GeneRejectFilter Man page
as.character.Layout Man page
as.character.LayoutGroups Man page
as.character.MAData Man page
as.character.MicroarrayData Man page
as.character.PlateGroups Man page
as.character.PrintdipGroups Man page
as.character.PrinttipGroups Man page
as.character.RGData Man page
as.character.RawData Man page
as.character.Replicates Man page
as.character.SlideColumnGroups Man page
as.character.SlideRowGroups Man page
as.character.SpotPosition Man page Man page
as.character.SuperGroups Man page
as.character.TMAData Man page
as.data.frame Man page
as.data.frame,MicroarrayData-method Man page
as.data.frame,SpotPosition-method Man page
as.data.frame.Array Man page
as.data.frame.ExperimentalSetup Man page
as.data.frame.GalLayout Man page
as.data.frame.Layout Man page
as.data.frame.MicroarrayData Man page Man page
as.data.frame.SpotPosition Man page Man page
as.layout Man page
as.layout,SMA-method Man page
as.layout.SMA Man page Man page
as.matrix Man page
as.matrix.DesignMatrix Man page
as.matrix.GeneSlideArray Man page
as.matrix.MicroarrayArray Man page
as.matrix.SpotSlideArray Man page
asGSRArray Man page
asGSRArray.GSRArray Man page
asGSRArray.SSMatrix Man page
asGSRArray.default Man page
asGSRArray.matrix Man page
asSSMatrix Man page
asSSMatrix.GSRArray Man page
asSSMatrix.SSMatrix Man page
asSSMatrix.default Man page
asSSMatrix.matrix Man page
backtransformAffine Man page
boxplot,MicroarrayData-method Man page
boxplot.MAData Man page
boxplot.MicroarrayData Man page Man page
boxplot.RGData Man page
boxplot.RawData Man page
calibrateMultiscan Man page
calibrateMultiscan,RGData-method Man page
calibrateMultiscan.RGData Man page Man page
calibrateMultiscan.RawData Man page
changeInput Man page
changeInput,Filter-method Man page
changeInput,ParallelFilter-method Man page
changeInput,SerialFilter-method Man page
changeInput.Filter Man page Man page
changeInput.ParallelFilter Man page Man page
changeInput.SerialFilter Man page Man page
clearCache Man page
clearCache.MicroarrayData Man page
clearFlag Man page
clearFlag,MicroarrayData-method Man page
clearFlag.MicroarrayData Man page Man page
coef.AffineModelFit Man page
com.braju.sma.dimStr Man page Source code
convertFieldNames Man page
convertFieldNames,GenePixData-method Man page
convertFieldNames.GenePixData Man page Man page
createColors Man page
createColors.MicroarrayData Man page
dataFrameToList Man page
dataFrameToList.MicroarrayData Man page
diff.MultiwayArray Man page
dim<-.GSRArray Man page
drawCurveFit Man page
drawCurveFit.MAData Man page
equals,Layout-method Man page
equals,MicroarrayData-method Man page
equals.Layout Man page Man page
equals.MicroarrayData Man page Man page
equals.Replicates Man page
equals.SpotPosition Man page
estimateMACurve Man page
estimateMACurve,MAData-method Man page
estimateMACurve.MAData Man page Man page
extract Man page
extract,MicroarrayData-method Man page
extract.MicroarrayData Man page Man page
extract.SpotPosition Man page
extractLayout Man page
extractLayout.SpotData Man page
extractLayout.SpotfinderData Man page
findChannelBiasDifferences Man page
findChannelBiasDifferences.RGData Man page
findSetupFiles Man page
findSetupFiles,ExperimentalSetup-method Man page
findSetupFiles.ExperimentalSetup Man page Man page
fitIWPCA Man page
fitIWPCA.RGData Man page
fitMultiscanAffine Man page
fitMultiscanAffine,RGData-method Man page
fitMultiscanAffine.RGData Man page Man page
fitted.AffineModelFit Man page
flip.Matrix Man page
fromDataFrame Man page
fromDataFrame.Layout Man page
fromLayout Man page
fromLayout.Replicates Man page
fromSSMatrix Man page
fromSSMatrix.GSRArray Man page
fromSaturatedSignals Man page
fromSaturatedSignals,SignalWeights-method Man page
fromSaturatedSignals.SignalWeights Man page Man page
fromType Man page
fromType.Replicates Man page
getA Man page
getA.AffineModelFit Man page
getA.RGData Man page
getADiagonal Man page
getADiagonal.AffineModelFit Man page
getAbscent Man page
getAbscent.GenePixData Man page
getAbscent.ImaGeneData Man page
getAbsolutePath.MicroarrayData Man page
getAdjustedSpotVariability Man page
getAdjustedSpotVariability,MAData-method Man page
getAdjustedSpotVariability.MAData Man page Man page
getArea Man page
getArea,GenePixData-method Man page
getArea.GenePixData Man page Man page
getArea.ImaGeneData Man page
getArea.QuantArrayData Man page
getArea.ScanAlyze20Data Man page
getArea.ScanAlyzeData Man page
getArea.SpotData Man page
getArea.SpotfinderData Man page
getArrayAspectRatio Man page
getArrayAspectRatio.GenePixData Man page
getArrayAspectRatio.SpotData Man page
getArrayBottom Man page
getArrayBottom.GenePixData Man page
getArrayBottom.SpotData Man page
getArrayHeight Man page
getArrayHeight.GenePixData Man page
getArrayHeight.SpotData Man page
getArrayLeft Man page
getArrayLeft.GenePixData Man page
getArrayLeft.SpotData Man page
getArrayRight Man page
getArrayRight.GenePixData Man page
getArrayRight.SpotData Man page
getArrayTop Man page
getArrayTop.GenePixData Man page
getArrayTop.SpotData Man page
getArrayWidth Man page
getArrayWidth.GenePixData Man page
getArrayWidth.SpotData Man page
getAspectRatio,SpotPosition-method Man page
getAspectRatio.SpotPosition Man page Man page
getB Man page
getB.AffineModelFit Man page
getBackground Man page
getBackground,RawData-method Man page
getBackground.GenePixData Man page
getBackground.QuantArrayData Man page
getBackground.RawData Man page Man page
getBackground.ScanAlyze20Data Man page
getBackground.ScanAlyzeData Man page
getBackground.SpotData Man page
getBackground.SpotfinderData Man page
getBackgroundArea Man page
getBackgroundArea.GenePixData Man page
getBackgroundSD Man page
getBackgroundSD,GenePixData-method Man page
getBackgroundSD.GenePixData Man page Man page
getBackgroundSD.QuantArrayData Man page
getBackgroundSD.ScanAlyze20Data Man page
getBad Man page
getBad.GenePixData Man page
getBgArea Man page
getBgArea.GenePixData Man page
getBgArea.ImaGeneData Man page
getBgArea.ScanAlyze20Data Man page
getBgArea.ScanAlyzeData Man page
getBgArea.SpotData Man page
getBgArea.SpotfinderData Man page
getBlank Man page
getBlank.Layout Man page
getBlank.MicroarrayData Man page
getBlock Man page
getBlock.GalLayout Man page
getBottomEdge Man page
getBottomEdge,SpotPosition-method Man page
getBottomEdge.SpotPosition Man page Man page
getCache Man page
getCache.MicroarrayData Man page
getCalibratedMultiscan Man page
getCalibratedMultiscan.RGData Man page
getChannelNames Man page
getChannelNames,GenePixData-method Man page
getChannelNames,MicroarrayData-method Man page
getChannelNames.GenePixData Man page Man page
getChannelNames.MicroarrayData Man page Man page
getChannelNames.RGData Man page
getCircularity Man page
getCircularity.GenePixData Man page
getCircularity.ImaGeneData Man page
getCircularity.ScanAlyzeData Man page
getCircularity.SpotData Man page
getCircularity.SpotfinderData Man page
getCoefficients Man page
getCoefficients.AffineModelFit Man page
getColors,MAData-method Man page
getColors,RGData-method Man page
getColors,RawData-method Man page
getColors.MAData Man page Man page
getColors.MicroarrayData Man page
getColors.RGData Man page Man page
getColors.RawData Man page Man page
getColors.TMAData Man page
getColumn Man page
getColumn.GalLayout Man page
getDataFiles Man page
getDataFiles.ExperimentalSetup Man page
getDegreesOfFreedom Man page
getDegreesOfFreedom.TMAData Man page
getDenseSpots Man page
getDenseSpots.MAData Man page
getDesignMatrix Man page
getDesignMatrix.Analyzer Man page
getDiameter Man page
getDiameter.ScanAlyze20Data Man page
getDiameter.ScanAlyzeData Man page
getDistance Man page
getDistance.AffineModelFit Man page
getDistancesTo Man page
getDistancesTo,SpotPosition-method Man page
getDistancesTo.SpotPosition Man page Man page
getDuplicates Man page
getDuplicates,GeneGroups-method Man page
getDuplicates.GeneGroups Man page Man page
getDyesUsed Man page
getDyesUsed.ExperimentalSetup Man page
getExcludedSpots Man page
getExcludedSpots.MicroarrayData Man page
getExtra Man page
getExtra,MicroarrayData-method Man page
getExtra.MicroarrayData Man page Man page
getExtreme Man page
getExtreme.MicroarrayData Man page
getField Man page
getField.MicroarrayData Man page
getFieldNames Man page
getFieldNames,MicroarrayData-method Man page
getFieldNames.GalLayout Man page
getFieldNames.MicroarrayData Man page Man page
getFirst Man page
getFirst.PlateGroups Man page
getFlag Man page
getFlag,MicroarrayData-method Man page
getFlag.MicroarrayData Man page Man page
getFocusPosition Man page
getFocusPosition.GenePixData Man page
getForeground Man page
getForeground,RawData-method Man page
getForeground.GenePixData Man page
getForeground.QuantArrayData Man page
getForeground.RawData Man page Man page
getForeground.ScanAlyze20Data Man page
getForeground.ScanAlyzeData Man page
getForeground.SpotData Man page
getForeground.SpotfinderData Man page
getForegroundSD Man page
getForegroundSD,GenePixData-method Man page
getForegroundSD,SpotData-method Man page
getForegroundSD.GenePixData Man page Man page
getForegroundSD.QuantArrayData Man page
getForegroundSD.ScanAlyze20Data Man page
getForegroundSD.SpotData Man page Man page
getForegroundSE Man page
getForegroundSE,GenePixData-method Man page
getForegroundSE,SpotData-method Man page
getForegroundSE.GenePixData Man page Man page
getForegroundSE.SpotData Man page Man page
getForegroundSNR Man page
getForegroundSNR.QuantArrayData Man page
getG Man page
getG.MAData Man page
getGene Man page
getGene.Replicates Man page
getGeneDiscrepancies Man page
getGeneDiscrepancies.MAData Man page
getGeneGroups Man page
getGeneGroups.Layout Man page
getGeneIndex Man page
getGeneIndex.Layout Man page
getGeneReplicateIndex Man page
getGeneReplicateIndex.Layout Man page
getGeneReplicateSlideValues Man page
getGeneReplicateSlideValues.GeneReplicateSlideArray Man page
getGeneReplicateSlideValues.GeneSlideArray Man page
getGeneReplicateSlideValues.MicroarrayArray Man page
getGeneReplicateSlideValues.SpotSlideArray Man page
getGeneReplicateSlideValues.default Man page
getGeneResiduals Man page
getGeneResiduals.MAData Man page
getGeneSlideReplicateIndex Man page
getGeneSlideReplicateIndex,MicroarrayData-method Man page
getGeneSlideReplicateIndex.MicroarrayData Man page Man page
getGeneSlideValues Man page
getGeneSlideValues.GeneReplicateSlideArray Man page
getGeneSlideValues.GeneSlideArray Man page
getGeneSlideValues.MicroarrayArray Man page
getGeneSlideValues.SpotSlideArray Man page
getGeneSlideValues.default Man page
getGeneVariability Man page
getGeneVariability,MAData-method Man page
getGeneVariability.MAData Man page Man page
getGenewiseResiduals Man page
getGenewiseResiduals.MAData Man page
getGrid Man page
getGrid.ScanAlyze20Data Man page
getGrid.ScanAlyzeData Man page
getGridColumn Man page
getGridColumn.GalLayout Man page
getGridRow Man page
getGridRow.GalLayout Man page
getGroupValues Man page
getGroupValues.LayoutGroups Man page
getGroups Man page
getGroups.SuperGroups Man page
getHeaderField Man page
getHeaderField.GenePixData Man page
getHeaderFields Man page
getHeaderFields.GenePixData Man page
getHistogram Man page
getHistogram.MAData Man page
getID Man page
getID.Layout Man page
getId Man page
getId,Layout-method Man page
getId.Layout Man page Man page
getImageSoftwaresUsed Man page
getImageSoftwaresUsed.ExperimentalSetup Man page
getInclude Man page
getInclude.MicroarrayData Man page
getIndex Man page
getIndex,AcceptFilter-method Man page
getIndex,AndFilter-method Man page
getIndex,FieldFilter-method Man page
getIndex,Filter-method Man page
getIndex,Layout-method Man page
getIndex,OrFilter-method Man page
getIndex.AcceptFilter Man page Man page
getIndex.AndFilter Man page Man page
getIndex.FieldFilter Man page Man page
getIndex.Filter Man page Man page
getIndex.GeneAcceptFilter Man page
getIndex.GeneRejectFilter Man page
getIndex.Layout Man page Man page
getIndex.NotFilter Man page
getIndex.OrFilter Man page Man page
getIndex.RejectFilter Man page
getIndex0 Man page
getIndex0.FieldFilter Man page
getIndices Man page
getIndices,Layout-method Man page
getIndices.Layout Man page Man page
getInput Man page
getInput,Filter-method Man page
getInput,ParallelFilter-method Man page
getInput,SerialFilter-method Man page
getInput.Filter Man page Man page
getInput.ParallelFilter Man page Man page
getInput.SerialFilter Man page Man page
getKnownHeadersWithType Man page
getKnownHeadersWithType.GenePixData Man page
getKnownHeadersWithType.ScanAlyze20Data Man page
getKnownHeadersWithType.ScanAlyzeData Man page
getLabel Man page
getLabel,MicroarrayData-method Man page
getLabel.MicroarrayData Man page Man page
getLaserOnTime Man page
getLaserOnTime.GenePixData Man page
getLaserPower Man page
getLaserPower.GenePixData Man page
getLast Man page
getLast.PlateGroups Man page
getLayout Man page
getLayout,MicroarrayData-method Man page
getLayout.LayoutGroups Man page
getLayout.MicroarrayArray Man page
getLayout.MicroarrayData Man page Man page
getLayoutFiles Man page
getLayoutFiles.ExperimentalSetup Man page
getLayoutGroupsByName Man page
getLayoutGroupsByName.Layout Man page
getLeftEdge Man page
getLeftEdge,SpotPosition-method Man page
getLeftEdge.SpotPosition Man page Man page
getLinesAveraged Man page
getLinesAveraged.GenePixData Man page
getLocation Man page
getLocation,Layout-method Man page
getLocation.Layout Man page Man page
getLogIntensities Man page
getLogIntensities,RGData-method Man page
getLogIntensities.RGData Man page Man page
getLogRatios Man page
getLogRatios,RGData-method Man page
getLogRatios.RGData Man page Man page
getM Man page
getM.RGData Man page
getMOR Man page
getMOR,MAData-method Man page
getMOR.MAData Man page Man page
getMOR2003a Man page
getMOR2003a,MAData-method Man page
getMOR2003a.MAData Man page Man page
getMaxHeight Man page
getMaxHeight,SpotPosition-method Man page
getMaxHeight.SpotPosition Man page Man page
getMaxWidth Man page
getMaxWidth,SpotPosition-method Man page
getMaxWidth.SpotPosition Man page Man page
getName,Layout-method Man page
getName.Layout Man page Man page
getNames Man page
getNames,GeneGroups-method Man page
getNames.GeneGroups Man page Man page
getNames.LayoutGroups Man page
getNames.PlateGroups Man page
getNames.PrintdipGroups Man page
getNames.PrinttipGroups Man page
getNames.SlideColumnGroups Man page
getNames.SlideRowGroups Man page
getNames.SuperGroups Man page
getNotFound Man page
getNotFound.GenePixData Man page
getPMTGain Man page
getPMTGain.GenePixData Man page
getPValues Man page
getPValues.TMAData Man page
getParameter Man page
getParameter,Filter-method Man page
getParameter.Filter Man page Man page
getParameter.Replicates Man page
getPerimeter Man page
getPerimeter.SpotData Man page
getPerimeter.SpotfinderData Man page
getPixelSize Man page
getPixelSize.GenePixData Man page
getPlate Man page
getPlate.Layout Man page
getPlateGroups Man page
getPlateGroups.Layout Man page
getPlateNumber Man page
getPlateNumber.Layout Man page
getPosition,Layout-method Man page
getPosition.Layout Man page Man page
getPrintdipGroups Man page
getPrintdipGroups.Layout Man page
getPrintorder Man page
getPrintorder,Layout-method Man page
getPrintorder.Layout Man page Man page
getPrintorderIndices Man page
getPrintorderIndices.PlateGroups Man page
getPrinttipGroups Man page
getPrinttipGroups.Layout Man page
getProbeWeights Man page
getProbeWeights.MicroarrayData Man page
getQuadruplicates Man page
getQuadruplicates,GeneGroups-method Man page
getQuadruplicates.GeneGroups Man page Man page
getR Man page
getR.MAData Man page
getRange Man page
getRange.MAData Man page
getRawData Man page
getRawData,GenePixData-method Man page
getRawData,ImaGeneData-method Man page
getRawData,QuantArrayData-method Man page
getRawData,ScanAlyzeData-method Man page
getRawData,SpotData-method Man page
getRawData,SpotfinderData-method Man page
getRawData.GenePixData Man page Man page
getRawData.ImaGeneData Man page Man page
getRawData.QuantArrayData Man page Man page
getRawData.ScanAlyzeData Man page Man page
getRawData.SpotData Man page Man page
getRawData.SpotfinderData Man page Man page
getReplicates Man page
getReplicates,GeneGroups-method Man page
getReplicates.GeneGroups Man page Man page
getReplicates.Layout Man page
getRgn R2 Man page
getRgn R2.GenePixData Man page
getRightEdge Man page
getRightEdge,SpotPosition-method Man page
getRightEdge.SpotPosition Man page Man page
getRow Man page
getRow.GalLayout Man page
getSE Man page
getSE.TMAData Man page
getSNR Man page
getSNR.SpotData Man page
getSNR.SpotfinderData Man page
getSNR1 Man page
getSNR1.RawData Man page
getSNR2 Man page
getSNR2.RawData Man page
getSampleUsed Man page
getSampleUsed.ExperimentalSetup Man page
getScannersUsed Man page
getScannersUsed.ExperimentalSetup Man page
getSignal Man page
getSignal,RawData-method Man page
getSignal.RawData Man page Man page
getSignalWeights Man page
getSignalWeights.MicroarrayData Man page
getSizes Man page
getSizes,GeneGroups-method Man page
getSizes.GeneGroups Man page Man page
getSizes.PlateGroups Man page
getSizes.PrintdipGroups Man page
getSizes.PrinttipGroups Man page
getSizes.SlideColumnGroups Man page
getSizes.SlideRowGroups Man page
getSizes.SuperGroups Man page
getSlide Man page
getSlide.MAData Man page
getSlideColumnGroups Man page
getSlideColumnGroups.Layout Man page
getSlideName Man page
getSlideName.MicroarrayData Man page
getSlideNames Man page
getSlideNames,MicroarrayData-method Man page
getSlideNames.MicroarrayData Man page Man page
getSlidePairs Man page
getSlidePairs.MicroarrayData Man page
getSlideRowGroups Man page
getSlideRowGroups.Layout Man page
getSpot Man page
getSpot.Replicates Man page
getSpotColumn Man page
getSpotColumn.ScanAlyze20Data Man page
getSpotColumn.ScanAlyzeData Man page
getSpotIndex Man page
getSpotIndex.Layout Man page
getSpotOrGeneSlideValues Man page
getSpotOrGeneSlideValues.GeneReplicateSlideArray Man page
getSpotOrGeneSlideValues.GeneSlideArray Man page
getSpotOrGeneSlideValues.MicroarrayArray Man page
getSpotOrGeneSlideValues.SpotSlideArray Man page
getSpotPosition Man page
getSpotPosition,GenePixData-method Man page
getSpotPosition,ImaGeneData-method Man page
getSpotPosition,QuantArrayData-method Man page
getSpotPosition,ScanAlyze20Data-method Man page
getSpotPosition,ScanAlyzeData-method Man page
getSpotPosition,SpotData-method Man page
getSpotPosition.GenePixData Man page Man page
getSpotPosition.ImaGeneData Man page Man page
getSpotPosition.MicroarrayData Man page
getSpotPosition.QuantArrayData Man page Man page
getSpotPosition.ScanAlyze20Data Man page Man page
getSpotPosition.ScanAlyzeData Man page Man page
getSpotPosition.SpotData Man page Man page
getSpotRow Man page
getSpotRow.ScanAlyze20Data Man page
getSpotRow.ScanAlyzeData Man page
getSpotSlideValues Man page
getSpotSlideValues.GeneReplicateSlideArray Man page
getSpotSlideValues.GeneSlideArray Man page
getSpotSlideValues.MicroarrayArray Man page
getSpotSlideValues.SpotSlideArray Man page
getSpotSlideValues.default Man page
getSpotValue Man page
getSpotValue.MicroarrayData Man page
getSpotValues Man page
getSpotValues.LayoutGroups Man page
getSpotVariability Man page
getSpotVariability.MAData Man page
getSpots Man page
getSpots,GeneGroups-method Man page
getSpots.GeneGroups Man page Man page
getSpots.LayoutGroups Man page
getSpots.PlateGroups Man page
getSpots.PrintdipGroups Man page
getSpots.PrinttipGroups Man page
getSpots.SlideColumnGroups Man page
getSpots.SlideRowGroups Man page
getSpots.SuperGroups Man page
getStandardError Man page
getStandardError.TMAData Man page
getTemperature Man page
getTemperature.GenePixData Man page
getTopEdge Man page
getTopEdge,SpotPosition-method Man page
getTopEdge.SpotPosition Man page Man page
getTreatments Man page
getTreatments.MicroarrayData Man page
getTriplicates Man page
getTriplicates,GeneGroups-method Man page
getTriplicates.GeneGroups Man page Man page
getView Man page
getView.GeneReplicateSlideArray Man page
getView.GeneSlideArray Man page
getView.MicroarrayArray Man page
getView.MicroarrayData Man page
getView.SpotSlideArray Man page
getView.default Man page
getVisible Man page
getVisible,Filter-method Man page
getVisible.Filter Man page Man page
getWavelengths Man page
getWavelengths.GenePixData Man page
getWeights Man page
getWeights.MicroarrayData Man page
getWeightsAsString Man page
getWeightsAsString.MicroarrayData Man page
getWithinChannelPairs Man page
getWithinChannelPairs.RGData Man page
getWithinChannelPairs.RawData Man page
gridSize Man page
gridSize,Layout-method Man page
gridSize.Layout Man page Man page
hasBootstrap Man page
hasBootstrap.AffineModelFit Man page
hasExcludedSpots Man page
hasExcludedSpots.MicroarrayData Man page
hasIDs Man page
hasIDs.Layout Man page
hasIds Man page
hasIds.Layout Man page
hasLayout Man page
hasLayout,MicroarrayData-method Man page
hasLayout.MicroarrayData Man page Man page
hasNames Man page
hasNames.Layout Man page
hasPlates Man page
hasPlates.Layout Man page
hasProbeWeights Man page
hasProbeWeights.MicroarrayData Man page
hasReplicates Man page
hasReplicates.Layout Man page
hasReplicates.Replicates Man page
hasSignalWeights Man page
hasSignalWeights.MicroarrayData Man page
hasWeights Man page
hasWeights.MicroarrayData Man page
highlight Man page
highlight,Filter-method Man page
highlight,MicroarrayData-method Man page
highlight.Filter Man page Man page
highlight.MicroarrayData Man page Man page
highlight.Replicates Man page
hist,MicroarrayData-method Man page
hist.MAData Man page
hist.MicroarrayData Man page Man page
indexOf Man page
indexOf,Layout-method Man page
indexOf.Layout Man page Man page
is.above Man page
is.above.default Man page
isFieldColorable Man page
isFieldColorable.MicroarrayData Man page
isSaturated Man page
isSaturated,MicroarrayData-method Man page
isSaturated.MicroarrayData Man page Man page
keepSlides Man page
keepSlides,MicroarrayData-method Man page
keepSlides.MicroarrayData Man page Man page
keepSpots Man page
keepSpots,MicroarrayData-method Man page
keepSpots.MicroarrayData Man page Man page
listFlags Man page
listFlags,MicroarrayData-method Man page
listFlags.MicroarrayData Man page Man page
listToMatrix Man page
listToMatrix.default Man page
lmGenewise Man page
lmGenewise.Analyzer Man page
loadData Man page
loadData.SMA Man page
loessQuantile Man page
loessQuantile,MAData-method Man page
loessQuantile.MAData Man page Man page
log Man page
log.RGData Man page
log.SpotData Man page
log.default Man page
log.na Man page Source code
logPreferred Man page
logPreferred.SpotData Man page
lowessCurve Man page
lowessCurve,MicroarrayData-method Man page
lowessCurve.MicroarrayData Man page Man page
lowessLine Man page
lowessLine.MicroarrayData Man page
mad Man page
mad.MultiwayArray Man page
mad.default Man page
matrixToList Man page
matrixToList.default Man page
mean,MAData-method Man page
mean,RGData-method Man page
mean.MAData Man page Man page
mean.MultiwayArray Man page
mean.RGData Man page Man page
median Man page
median.MultiwayArray Man page
median.default Man page
nbrOfColumns Man page
nbrOfColumns,Layout-method Man page
nbrOfColumns.Layout Man page Man page
nbrOfDataPoints Man page
nbrOfDataPoints.MicroarrayData Man page
nbrOfDimensions Man page
nbrOfDimensions.MultiwayArray Man page
nbrOfFields Man page
nbrOfFields,MicroarrayData-method Man page
nbrOfFields.GalLayout Man page
nbrOfFields.MicroarrayData Man page Man page
nbrOfGenes Man page
nbrOfGenes.Replicates Man page
nbrOfGrids Man page
nbrOfGrids,Layout-method Man page
nbrOfGrids.Layout Man page Man page
nbrOfGroups Man page
nbrOfGroups,GeneGroups-method Man page
nbrOfGroups.GeneGroups Man page Man page
nbrOfGroups.LayoutGroups Man page
nbrOfGroups.PlateGroups Man page
nbrOfGroups.PrintdipGroups Man page
nbrOfGroups.PrinttipGroups Man page
nbrOfGroups.SlideColumnGroups Man page
nbrOfGroups.SlideRowGroups Man page
nbrOfGroups.SuperGroups Man page
nbrOfHybridizations Man page
nbrOfHybridizations.ExperimentalSetup Man page
nbrOfPlates Man page
nbrOfPlates.Layout Man page
nbrOfReplicates Man page
nbrOfReplicates.Layout Man page
nbrOfReplicates.Replicates Man page
nbrOfRows Man page
nbrOfRows,Layout-method Man page
nbrOfRows.Layout Man page Man page
nbrOfSlides Man page
nbrOfSlides,MicroarrayData-method Man page
nbrOfSlides,SpotPosition-method Man page
nbrOfSlides.MicroarrayData Man page Man page
nbrOfSlides.SpotPosition Man page Man page
nbrOfSpots Man page
nbrOfSpots,Layout-method Man page
nbrOfSpots,MicroarrayData-method Man page
nbrOfSpots,SpotPosition-method Man page
nbrOfSpots.Layout Man page Man page
nbrOfSpots.MicroarrayData Man page Man page
nbrOfSpots.Replicates Man page
nbrOfSpots.SpotPosition Man page Man page
nbrOfTreatments Man page
nbrOfTreatments.MicroarrayData Man page
ncol.GeneReplicateSlideArray Man page
ncol.GeneSlideArray Man page
normalizeAcrossSlides Man page
normalizeAcrossSlides,MAData-method Man page
normalizeAcrossSlides.MAData Man page Man page
normalizeAffine Man page
normalizeAffine,MAData-method Man page
normalizeAffine,RGData-method Man page
normalizeAffine.MAData Man page Man page
normalizeAffine.RGData Man page Man page
normalizeAffine.RawData Man page
normalizeAffineShift Man page
normalizeAffineShift,MAData-method Man page
normalizeAffineShift.MAData Man page Man page
normalizeCurveFit Man page
normalizeCurveFit,MAData-method Man page
normalizeCurveFit,RGData-method Man page
normalizeCurveFit.MAData Man page Man page
normalizeCurveFit.RGData Man page Man page
normalizeGenewise Man page
normalizeGenewise.GenePixData Man page
normalizeGenewise.MAData Man page
normalizeGenewise.MicroarrayData Man page
normalizeGenewise.RGData Man page
normalizeGenewise.RawData Man page
normalizeGenewise.ScanAlyzeData Man page
normalizeGenewise.SpotData Man page
normalizeGenewise.SpotfinderData Man page
normalizeGroupsConstant Man page
normalizeGroupsConstant.MicroarrayData Man page
normalizeGroupsShiftFunction Man page
normalizeGroupsShiftFunction.MicroarrayData Man page
normalizeLoess Man page
normalizeLoess.RGData Man page
normalizeLogRatioShift Man page
normalizeLogRatioShift,MAData-method Man page
normalizeLogRatioShift.MAData Man page Man page
normalizeLowess Man page
normalizeLowess.RGData Man page
normalizePlatewise Man page
normalizePlatewise,MicroarrayData-method Man page
normalizePlatewise.MAData Man page
normalizePlatewise.MicroarrayData Man page Man page
normalizePrintorder Man page
normalizePrintorder.MAData Man page
normalizePrintorder.MicroarrayData Man page
normalizeQuantile Man page
normalizeQuantile.MAData Man page
normalizeQuantile.MicroarrayData Man page
normalizeQuantile.RGData Man page
normalizeQuantile.RawData Man page
normalizeRobustSpline Man page
normalizeRobustSpline.RGData Man page
normalizeSpatial Man page
normalizeSpatial.MAData Man page
normalizeSpatial.MicroarrayData Man page
normalizeSpline Man page
normalizeSpline.RGData Man page
normalizeWithinSlide Man page
normalizeWithinSlide,MAData-method Man page
normalizeWithinSlide.MAData Man page Man page
normalizeWithinSlide.RawData Man page
nrow.GeneReplicateSlideArray Man page
nrow.GeneSlideArray Man page
plot,MicroarrayData-method Man page
plot,SpotPosition-method Man page
plot.MAData Man page
plot.MicroarrayData Man page Man page
plot.RGData Man page
plot.RawData Man page
plot.SpotPosition Man page Man page
plot.TMAData Man page
plot3d.MAData Man page
plot3d.MicroarrayData Man page
plotDensity Man page
plotDensity,MicroarrayData-method Man page
plotDensity.MAData Man page
plotDensity.MicroarrayData Man page Man page
plotDiporder Man page
plotDiporder.MAData Man page
plotDiporder.MicroarrayData Man page
plotGene Man page
plotGene.MicroarrayData Man page
plotMvsA Man page
plotMvsAPairs Man page
plotMvsM Man page
plotMvsM,MAData-method Man page
plotMvsM.MAData Man page Man page
plotMvsMPairs Man page
plotPrintorder Man page
plotPrintorder,MicroarrayData-method Man page
plotPrintorder.MAData Man page
plotPrintorder.MicroarrayData Man page Man page
plotPrintorder.TMAData Man page
plotReplicates Man page
plotReplicates.MicroarrayData Man page
plotSpatial Man page
plotSpatial,GenePixData-method Man page
plotSpatial,MicroarrayData-method Man page
plotSpatial,QuantArrayData-method Man page
plotSpatial,ScanAlyzeData-method Man page
plotSpatial,SpotData-method Man page
plotSpatial,SpotfinderData-method Man page
plotSpatial.GenePixData Man page Man page
plotSpatial.ImaGeneData Man page
plotSpatial.MAData Man page
plotSpatial.MicroarrayData Man page Man page
plotSpatial.QuantArrayData Man page Man page
plotSpatial.RGData Man page
plotSpatial.RawData Man page
plotSpatial.ScanAlyzeData Man page Man page
plotSpatial.SpotData Man page Man page
plotSpatial.SpotfinderData Man page Man page
plotSpatial.TMAData Man page
plotSpatial3d Man page
plotSpatial3d,MicroarrayData-method Man page
plotSpatial3d.GenePixData Man page
plotSpatial3d.ImaGeneData Man page
plotSpatial3d.MAData Man page
plotSpatial3d.MicroarrayData Man page Man page
plotSpatial3d.QuantArrayData Man page
plotSpatial3d.ScanAlyzeData Man page
plotSpatial3d.SpotData Man page
plotSpatial3d.SpotfinderData Man page
plotTTest Man page
plotTTest.Analyzer Man page
plotXY Man page
plotXY,MicroarrayData-method Man page
plotXY.BMAData Man page
plotXY.MAData Man page
plotXY.MicroarrayData Man page Man page
plotXY.RGData Man page
plotXY.RawData Man page
plotXY.SSMatrix Man page
plotXY.TMAData Man page
points,SpotPosition-method Man page
points.MicroarrayData Man page
points.SpotPosition Man page Man page
popView Man page
popView.MicroarrayArray Man page
popView.default Man page
power Man page
power.RGData Man page
power.default Man page
preferredLogBase Man page
preferredLogBase.SpotData Man page
print.AffineModelFit Man page
print.ExperimentalSetup Man page
print.MultiwayArray Man page
prod Man page
prod.MultiwayArray Man page
prod.default Man page
projectUontoV Man page
pushView Man page
pushView.MicroarrayArray Man page
pushView.default Man page
put Man page
put.Layout Man page
putGene Man page
putGene.MicroarrayData Man page
putSlide Man page
putSlide.MicroarrayData Man page
qqnorm.MAData Man page
qqnorm.MicroarrayData Man page
qqplotTTest Man page
qqplotTTest.Analyzer Man page
quantile.MicroarrayData Man page
range.MAData Man page
range.MicroarrayData Man page
range.RGData Man page
range.RawData Man page
range2 Man page
range2.MicroarrayData Man page
read,ExperimentalSetup-method Man page
read,GalLayout-method Man page
read,GenePixData-method Man page
read,ImaGeneData-method Man page
read,Layout-method Man page
read,MicroarrayData-method Man page
read,QuantArrayData-method Man page
read,ScanAlyze20Data-method Man page
read,ScanAlyzeData-method Man page
read,SpotData-method Man page
read,SpotfinderData-method Man page
read.ExperimentalSetup Man page Man page
read.GalLayout Man page Man page
read.GenePixData Man page Man page
read.ImaGeneData Man page Man page
read.Layout Man page Man page
read.MAData Man page
read.MicroarrayData Man page Man page
read.QuantArrayData Man page Man page
read.RGData Man page
read.RawData Man page
read.ScanAlyze20Data Man page Man page
read.ScanAlyzeData Man page Man page
read.SpotData Man page Man page
read.SpotPosition Man page
read.SpotfinderData Man page Man page
read.table Man page
read.table.QuantArrayData Man page
read.table.default Man page
readAll Man page
readAll.GenePixData Man page
readAll.QuantArrayData Man page
readAll.ScanAlyzeData Man page
readAll.SpotData Man page
readHeader Man page
readHeader,GenePixData-method Man page
readHeader.GenePixData Man page Man page
readHeader.MicroarrayData Man page
readInternal Man page
readInternal.ScanAlyze20Data Man page
readInternal.ScanAlyzeData Man page
readInternalSafe Man page
readInternalSafe.ScanAlyzeData Man page
readOneFile Man page
readOneFile,QuantArrayData-method Man page
readOneFile,SpotfinderData-method Man page
readOneFile.GenePixData Man page
readOneFile.QuantArrayData Man page Man page
readOneFile.ScanAlyzeData Man page
readOneFile.SpotData Man page
readOneFile.SpotfinderData Man page Man page
readToList Man page
readToList.MicroarrayData Man page
removeSlides Man page
removeSlides,MicroarrayData-method Man page
removeSlides.MicroarrayData Man page Man page
removeSpots Man page
removeSpots,MicroarrayData-method Man page
removeSpots.MicroarrayData Man page Man page
rename Man page
rename.Layout Man page
renameFields Man page
renameFields.SpotData Man page
resetProbeWeights Man page
resetProbeWeights.MicroarrayData Man page
resetSignalWeights Man page
resetSignalWeights.MicroarrayData Man page
residuals.AffineModelFit Man page
rotate Man page
rotate.Matrix Man page
rowAverages Man page
rowAverages.matrix Man page
scalarProduct Man page
select Man page
select,MicroarrayData-method Man page
select.MicroarrayData Man page Man page
seq.LayoutGroups Man page
seq.MicroarrayData Man page
set,Layout-method Man page
set.Layout Man page Man page
set.MicroarrayData Man page
set.Replicates Man page
setByLayout Man page
setByLayout.Layout Man page
setCache Man page
setCache.MicroarrayData Man page
setDesignMatrix Man page
setDesignMatrix.Analyzer Man page
setExcludedSpots Man page
setExcludedSpots.MicroarrayData Man page
setExplicit Man page
setExplicit.Layout Man page
setExtra Man page
setExtra,MicroarrayData-method Man page
setExtra.MicroarrayData Man page Man page
setField Man page
setField.MAData Man page
setField.MicroarrayData Man page
setField.RGData Man page
setField.RawData Man page
setFlag Man page
setFlag,MicroarrayData-method Man page
setFlag.MicroarrayData Man page Man page
setGeneGroups Man page
setGeneGroups.Layout Man page
setGeneReplicateSlideValues Man page
setGeneReplicateSlideValues.MicroarrayArray Man page
setGeneSlideValues Man page
setGeneSlideValues.GeneSlideArray Man page
setGeneSlideValues.MicroarrayArray Man page
setGroups Man page
setGroups.SuperGroups Man page
setHeaderField Man page
setHeaderField.GenePixData Man page
setID Man page
setID.Layout Man page
setId Man page
setId,Layout-method Man page
setId.Layout Man page Man page
setLabel Man page
setLabel,MicroarrayData-method Man page
setLabel.MicroarrayData Man page Man page
setLayout Man page
setLayout,MicroarrayData-method Man page
setLayout.GenePixData Man page
setLayout.ImaGeneData Man page
setLayout.LayoutGroups Man page
setLayout.MicroarrayData Man page Man page
setLayout.QuantArrayData Man page
setName Man page
setName,Layout-method Man page
setName.Layout Man page Man page
setParameter Man page
setParameter,Filter-method Man page
setParameter.Filter Man page Man page
setParameter.Replicates Man page
setPlate Man page
setPlate.Layout Man page
setPlateGroups Man page
setPlateGroups.Layout Man page
setPrintdipGroups Man page
setPrintdipGroups.Layout Man page
setPrintorder Man page
setPrintorder.Layout Man page
setPrinttipGroups Man page
setPrinttipGroups.Layout Man page
setProbeWeights Man page
setProbeWeights,MicroarrayData-method Man page
setProbeWeights.MicroarrayData Man page Man page
setReplicates Man page
setReplicates.Layout Man page
setSaturated Man page
setSaturated,MicroarrayData-method Man page
setSaturated.MicroarrayData Man page Man page
setSignalWeights Man page
setSignalWeights.MicroarrayData Man page
setSlideColumnGroups Man page
setSlideColumnGroups.Layout Man page
setSlideName Man page
setSlideName.MicroarrayData Man page
setSlideNames Man page
setSlideNames,MicroarrayData-method Man page
setSlideNames.MicroarrayData Man page Man page
setSlideRowGroups Man page
setSlideRowGroups.Layout Man page
setSpotSlideValues Man page
setSpotSlideValues.MicroarrayArray Man page
setSpotSlideValues.SpotSlideArray Man page
setTreatments Man page
setTreatments.MicroarrayData Man page
setView Man page
setView.MicroarrayArray Man page
setView.MicroarrayData Man page
setVisible Man page
setVisible,Filter-method Man page
setVisible.Filter Man page Man page
setWeights Man page
setWeights.MicroarrayData Man page
shift Man page
shift,MAData-method Man page
shift,RGData-method Man page
shift,RawData-method Man page
shift.MAData Man page Man page
shift.RGData Man page Man page
shift.RawData Man page Man page
shiftEqualRG Man page
shiftEqualRG.MAData Man page
size,Layout-method Man page
size,MicroarrayData-method Man page
size,SpotPosition-method Man page
size.Layout Man page Man page
size.MicroarrayData Man page Man page
size.SpotPosition Man page Man page
str,MicroarrayData-method Man page
str.MicroarrayArray Man page
str.MicroarrayData Man page Man page
str.Replicates Man page
subplots,MicroarrayData-method Man page
subplots.MicroarrayData Man page Man page
sum Man page
sum.MultiwayArray Man page
sum.default Man page
summary,MicroarrayData-method Man page
summary.AffineModelFit Man page
summary.MicroarrayData Man page Man page
swapDyes Man page
swapDyes,MAData-method Man page
swapDyes,RGData-method Man page
swapDyes,RawData-method Man page
swapDyes.MAData Man page Man page
swapDyes.RGData Man page Man page
swapDyes.RawData Man page Man page
text,Filter-method Man page
text,MicroarrayData-method Man page
text.Filter Man page Man page
text.MicroarrayData Man page Man page
text.Replicates Man page
toPrintorderMatrix Man page
toPrintorderMatrix,Layout-method Man page
toPrintorderMatrix.Layout Man page Man page
toXYMatrix Man page
toXYMatrix,Layout-method Man page
toXYMatrix.Layout Man page Man page
topSpots Man page
topSpots,MAData-method Man page
topSpots.MAData Man page Man page
topSpots.TMAData Man page
tr Man page
ttest Man page
ttest.Analyzer Man page
unite Man page
unite,MicroarrayWeights-method Man page
unite.MicroarrayWeights Man page Man page
unloadData Man page
unloadData.SMA Man page
updateHeader Man page
updateHeader.ImaGeneData Man page
updateHeader.MicroarrayData Man page
validateArgumentChannel Man page
validateArgumentChannel.MicroarrayData Man page
validateArgumentChannels Man page
validateArgumentChannels,GenePixData-method Man page
validateArgumentChannels.GenePixData Man page Man page
validateArgumentChannels.MicroarrayData Man page
validateArgumentFileAndPath Man page
validateArgumentFileAndPath.File Man page
validateArgumentGroupBy Man page
validateArgumentGroupBy,MicroarrayData-method Man page
validateArgumentGroupBy.MicroarrayData Man page Man page
validateArgumentSlide Man page
validateArgumentSlide,MicroarrayData-method Man page
validateArgumentSlide.MicroarrayData Man page Man page
validateArgumentSlides Man page
validateArgumentSlides,MicroarrayData-method Man page
validateArgumentSlides.MicroarrayData Man page Man page
validateArgumentSpotIndex Man page
validateArgumentSpotIndex.MicroarrayData Man page
validateArgumentWeights Man page
validateArgumentWeights,MicroarrayData-method Man page
validateArgumentWeights.MicroarrayData Man page Man page
var Man page
var,MAData-method Man page
var,RGData-method Man page
var.MAData Man page Man page
var.MultiwayArray Man page
var.RGData Man page Man page
var.default Man page
write,GenePixData-method Man page
write,ImaGeneData-method Man page
write,Layout-method Man page
write,MicroarrayData-method Man page
write,QuantArrayData-method Man page
write,ScanAlyze20Data-method Man page
write,ScanAlyzeData-method Man page
write,SpotData-method Man page
write,SpotPosition-method Man page
write,SpotfinderData-method Man page
write.GalLayout Man page
write.GenePixData Man page Man page
write.ImaGeneData Man page Man page
write.Layout Man page Man page
write.MicroarrayData Man page Man page
write.QuantArrayData Man page Man page
write.ScanAlyze20Data Man page Man page
write.ScanAlyzeData Man page Man page
write.SpotData Man page Man page
write.SpotPosition Man page Man page
write.SpotfinderData Man page Man page
writeHeader Man page
writeHeader.MicroarrayData Man page
HenrikBengtsson/aroma documentation built on May 8, 2017, 3:58 p.m.