SlideColumnGroups: The SlideColumnGroups class

Description Usage Arguments Fields and Methods Author(s) See Also Examples

Description

Package: aroma
Class SlideColumnGroups

Object
~~|
~~+--LayoutGroups
~~~~~~~|
~~~~~~~+--SlideColumnGroups

Directly known subclasses:

public abstract static class SlideColumnGroups
extends LayoutGroups

Usage

1

Arguments

layout

A Layout object specifying the layout of a set of microarrays.

groups

A list of length equal to the number of rows of spots on each slide and each element contains the spot indices in each row. If NULL, the rows are obtained from the Layout object.

Fields and Methods

Methods:

as.character -
getNames -
getSizes -
getSpots -
nbrOfGroups -

Methods inherited from LayoutGroups:
apply, as.character, getGroupValues, getLayout, getNames, getSpots, getSpotValues, nbrOfGroups, seq, setLayout

Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstanciationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, save

Author(s)

Henrik Bengtsson (http://www.braju.com/R/)

See Also

For more information see SlideColumnGroups.

Examples

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
17
layout <- Layout$read("MouseArray.Layout.dat", path=system.file("data-ex", package="aroma"))

# Extract the printtip groups
printtips <- PrinttipGroups(layout)
print(printtips)

# Extract the plate groups (using getPlate(layout))
plates <- PlateGroups(layout)
print(plates)

# Extract the (within-slide) replicate groups (using getName/ID(layout))
replicates <- GeneGroups(layout)
print(replicates)

# Define the (within-slide) replicate groups
duplicates <- GeneGroups(layout, "neighboring-pairs")
print(duplicates)

HenrikBengtsson/aroma documentation built on May 7, 2019, 12:56 a.m.