getRawData.SpotfinderData: Gets the raw intensites from the SpotfinderData structure
In HenrikBengtsson/aroma: An R Object-oriented Microarray Analysis package
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
Extracts the red and green spot intensitites (both foreground and background)
from the SpotfinderData object and returns a RawData object.
Usage
1
2
## S3 method for class 'SpotfinderData'
getRawData(this, slides=NULL, ...)
Arguments
slides
Specifying which slides to be extracted. If NULL,
all slides are considered.
Details
The R and Rb channels will come from the *A* fields, and
the G and Gb channels will come from the *B* fields.
To swap the channels use dyeSwap().
Value
Returns a RawData object containing the specified slides.
Note that the returned foreground and background signals for
Spotfinder data is not necessarily integers,
e.g. R==0.32 is possible.
Author(s)
Henrik Bengtsson (http://www.braju.com/R/)
See Also
For more information see SpotfinderData.
Examples
1
## Not run: # For an example see help(SpotfinderData).
HenrikBengtsson/aroma documentation built on May 7, 2019, 12:56 a.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
Extracts the red and green spot intensitites (both foreground and background)
from the SpotfinderData object and returns a RawData object.
Usage
1 2 | ## S3 method for class 'SpotfinderData'
getRawData(this, slides=NULL, ...)
|
Arguments
slides |
Specifying which slides to be extracted. If |
Details
The R and Rb channels will come from the *A* fields, and the G and Gb channels will come from the *B* fields. To swap the channels use dyeSwap().
Value
Returns a RawData object containing the specified slides.
Note that the returned foreground and background signals for
Spotfinder data is not necessarily integers,
e.g. R==0.32 is possible.
Author(s)
Henrik Bengtsson (http://www.braju.com/R/)
See Also
For more information see SpotfinderData.
Examples
1 | ## Not run: # For an example see help(SpotfinderData).
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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