read.MicroarrayData: Reads microarray data generated by another software package

In HenrikBengtsson/aroma: An R Object-oriented Microarray Analysis package

Description

Static method that reads microarray data generated by another software package into a MicroarrayData object. If the a filename pattern is used, the files are guaranteed to be read in lexical (alphabetic) order.

Usage

MicroarrayData$read(..., verbose=FALSE)

Arguments

...	Any arguments accepted by the read() methods of the subclasses. Such arguments are commonly: filename, pattern and path.
verbose	If TRUE, information will printed out during the reading of the file.

Value

Returns a MicroarrayData object.

Author(s)

Henrik Bengtsson (http://www.braju.com/R/)

Examples

  ## Not run: 
  # Due to a bug in R CMD check (R v1.7.1) the MicroarrayData$read() call
  # below will call getKnownSubclasses(), which will generate
  #   "Error in exists(objectName, mode = "function") :
  #	   [2003-07-07 23:32:41] Exception: F used instead of FALSE"
  # Note that the example still work, just not in R CMD check

  sa <- MicroarrayData$read(pattern="group.*.dat", path=system.file("data-ex", package="aroma"))
  
## End(Not run)

HenrikBengtsson/aroma documentation built on May 7, 2019, 12:56 a.m.