inst/testScripts/system/chipTypes/Mapping250K_Nsp,Sty/20100518a,CRMAv2.R

In HenrikBengtsson/calmate: Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation

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# Author: Henrik Bengtsson
# Created on: 2010-05-18
# Last updated: 2010-05-18
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# Data:
# rawData/GSE12702/Mapping250K_Nsp/
#
# URL: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE12702
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# AS-CRMAv2
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library("aroma.affymetrix");
dataSet <- "Affymetrix_2006-TumorNormal";
chipType <- "Mapping250K_Nsp";
res <- doCRMAv2(dataSet, chipType=chipType, combineAlleles=FALSE, 
                                              plm="RmaCnPlm", verbose=-10);
print(res);


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# HISTORY:
# 2010-05-18
# o Created.
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