Files in HenrikBengtsson/calmate
Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation
.Rbuildignore
.aspell/WORDLIST
.aspell/WORDLIST.rds
.aspell/defaults.R
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/covr.yaml
.gitignore
.make/Makefile
CONTRIBUTING.md
DESCRIPTION
Makefile
NAMESPACE
NEWS
OVERVIEW.md
R/000.R
R/999.NonDocumentedObjects.R
R/999.package.R
R/CalMaTeCalibration.R
R/calmateByThetaAB.R
R/calmateByTotalAndFracB.R
R/fitCalMaTe.R
R/fitCalMaTeCNprobes.R
R/fitCalMaTeInternal.R
R/fitCalMaTeMedians.R
R/fitCalMaTeV1.R
R/fitCalMaTeV2.R
R/thetaAB2TotalAndFracB.R
R/truncateFracB.R
R/truncateThetaAB.R
R/utils.R
R/zzz.R
README.md
cran-comments.md
incl/999.missingdocs.txt
incl/CalMaTeCalibration.Rex
incl/OrtizM_etal_2012.Rd
incl/calmateByThetaAB.Rex
incl/calmateByTotalAndFracB.Rex
incl/testScriptCalMaTe2.Rex
incl/thetaAB2TotalAndFracB.Rex
inst/CITATION
inst/WORDLIST
inst/exData/myASCNData.Rbin
inst/exData/oneSNPdata,2x40.Rbin
inst/exData/thetaAB,100x2x40.Rbin
inst/testScripts/publications/CalMaTe/000.README.txt
inst/testScripts/publications/CalMaTe/A01.TCGA,CalMaTe.R
inst/testScripts/publications/CalMaTe/A02.TCGA,CalMaTe,plots.R
inst/testScripts/publications/CalMaTe/B01.GSE12702,ASCRMAv2.R
inst/testScripts/publications/CalMaTe/B02.GSE12702,CalMaTe.R
inst/testScripts/publications/CalMaTe/Z01.plots,byChromosome.R
inst/testScripts/publications/CalMaTe/Z02.plots,segments.R
inst/testScripts/publications/CalMaTe/Z03.plots,byUnits.R
inst/testScripts/system/chipTypes/Mapping10K_Xba142/20120206a,CRMAv2.R
inst/testScripts/system/chipTypes/Mapping10K_Xba142/20120206b,CalMaTe.R
inst/testScripts/system/chipTypes/Mapping250K_Nsp,Sty/20100518a,CRMAv2.R
inst/testScripts/system/chipTypes/Mapping250K_Nsp,Sty/20100518b,CalMaTe.R
inst/testScripts/system/chipTypes/Mapping250K_Nsp,Sty/20100620,CalMaTe.R
inst/testScripts/widgets/CalMaTe/001.include.R
inst/testScripts/widgets/CalMaTe/A01.TCGA,CalMaTe.R
inst/testScripts/widgets/CalMaTe/Z02.plots,segments.R
man/CalMaTeCalibration.Rd
man/Non-documented_objects.Rd
man/calmate-package.Rd
man/calmateByThetaAB.array.Rd
man/calmateByTotalAndFracB.array.Rd
man/fitCalMaTe.matrix.Rd
man/fitCalMaTeCNprobes.matrix.Rd
man/fitCalMaTeInternal.Rd
man/thetaAB2TotalAndFracB.array.Rd
tests/calmateByThetaAB.R
tests/calmateByTotalAndFracB.R
tests/fitCalMaTe.R
tests/fitCalMaTeMedians.R
tests/testScriptCalMaTe1.R
tests/thetaAB2TotalAndFracB.R
