inst/templates-for-R_CMD_check/setup.R

In HenrikBengtsson/future.batchtools: A Future API for Parallel and Distributed Processing using 'batchtools'

## When running R CMD check on HPC environment with a job scheduler,
## the batchtools registry files must be written to a location on the
## file system that is accessible from all compute nodes.  This is
## typically not the case with the default tempdir()/TMPDIR, which
## often is local and unique to each machine

tmpdir <- tempfile(pattern = "R_CMD_check_",
                   tmpdir = file.path("~", "tmp", ".future.batchtools"))
if (!utils::file_test("-d", tmpdir)) {
  dir.create(tmpdir, recursive = TRUE)
  if (!utils::file_test("-d", tmpdir)) {
    stop("R_BATCHTOOLS_SEARCH_PATH/setup.R: Failed to create folder: ",
         sQuote(tmpdir))
  }
}

## Force the .future/ folders to be in this folder
Sys.setenv("R_FUTURE_CACHE_PATH" = file.path(tmpdir, ".future"))

## Make batchtools_<hpc> backends use this as their working directory
registry <- list(work.dir = tmpdir)
batchtools_sge <- future::tweak(future.batchtools::batchtools_sge, registry = registry)