library("matrixStats")
rowAlls_R <- function(x, value = TRUE, na.rm = FALSE, ..., useNames = NA) {
if (is.na(value)) {
res <- apply(is.na(x), MARGIN = 1L, FUN = all, na.rm = na.rm)
} else {
y <- x == value
# Preserve dimnames attribute
dim <- dim(x) # for 0xN and Mx0 cases; needed in R (< 3.4.0)
if (!isTRUE(all.equal(dim(y), dim))) {
dim(y) <- dim
dimnames(y) <- dimnames(x)
}
res <- apply(y, MARGIN = 1L, FUN = all, na.rm = na.rm)
}
if (is.na(useNames) || !useNames) names(res) <- NULL
res
}
rowAnys_R <- function(x, value = TRUE, na.rm = FALSE, ..., useNames = NA) {
if (is.na(value)) {
res <- apply(is.na(x), MARGIN = 1L, FUN = any, na.rm = na.rm)
} else {
y <- x == value
# Preserve dimnames attribute
dim <- dim(x) # for 0xN and Mx0 cases; needed in R (< 3.4.0)
if (!isTRUE(all.equal(dim(y), dim))) {
dim(y) <- dim
dimnames(y) <- dimnames(x)
}
res <- apply(y, MARGIN = 1L, FUN = any, na.rm = na.rm)
}
if (is.na(useNames) || !useNames) names(res) <- NULL
res
}
rowAnyMissings_R <- function(x, ..., useNames = NA) {
res <- apply(x, MARGIN = 1L, FUN = anyMissing)
if (is.na(useNames) || !useNames) names(res) <- NULL
res
}
all_R <- function(x, value = TRUE, ...) {
if (is.na(value)) {
all(is.na(x), ...)
} else {
all(x == value, ...)
}
}
any_R <- function(x, value = TRUE, ...) {
if (is.na(value)) {
any(is.na(x), ...)
} else {
any(x == value, ...)
}
}
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# Subsetted tests
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
source("utils/validateIndicesFramework.R")
x <- matrix(runif(6 * 6, min = -3, max = 3), nrow = 6, ncol = 6)
storage.mode(x) <- "integer"
x[2:3, ] <- NA_integer_
x[2, 1] <- 0L
x[4:5, ] <- 0L
x[4, 6] <- NA_integer_
# To check names attribute
dimnames <- list(letters[1:6], LETTERS[1:6])
# Test with and without dimnames on x
for (setDimnames in c(TRUE, FALSE)) {
if (setDimnames) dimnames(x) <- dimnames
else dimnames(x) <- NULL
count <- 0L
for (rows in index_cases) {
for (cols in index_cases) {
count <- count + 1L
na.rm <- c(TRUE, FALSE)[count %% 2 + 1]
useNames <- c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)
useNames <- useNames[count %% length(useNames) + 1]
validateIndicesTestMatrix(x, rows, cols,
ftest = rowAlls, fsure = rowAlls_R,
value = 0, na.rm = TRUE, useNames = useNames)
validateIndicesTestMatrix(x, rows, cols,
ftest = rowAlls, fsure = rowAlls_R,
value = 0, na.rm = FALSE, useNames = useNames)
validateIndicesTestMatrix(x, rows, cols,
ftest = rowAlls, fsure = rowAlls_R,
value = NA_integer_, useNames = useNames)
validateIndicesTestMatrix(x, rows, cols,
fcoltest = colAlls, fsure = rowAlls_R,
value = 0, na.rm = TRUE, useNames = useNames)
validateIndicesTestMatrix(x, rows, cols,
fcoltest = colAlls, fsure = rowAlls_R,
value = 0, na.rm = FALSE, useNames = useNames)
validateIndicesTestMatrix(x, rows, cols,
fcoltest = colAlls, fsure = rowAlls_R,
value = NA_integer_, useNames = useNames)
validateIndicesTestMatrix(x, rows, cols,
ftest = rowAnys, fsure = rowAnys_R,
value = 0, na.rm = TRUE, useNames = useNames)
validateIndicesTestMatrix(x, rows, cols,
ftest = rowAnys, fsure = rowAnys_R,
value = 0, na.rm = FALSE, useNames = useNames)
validateIndicesTestMatrix(x, rows, cols,
ftest = rowAnys, fsure = rowAnys_R,
value = NA_integer_, useNames = useNames)
validateIndicesTestMatrix(x, rows, cols,
fcoltest = colAnys, fsure = rowAnys_R,
value = 0, na.rm = TRUE, useNames = useNames)
validateIndicesTestMatrix(x, rows, cols,
fcoltest = colAnys, fsure = rowAnys_R,
value = 0, na.rm = FALSE, useNames = useNames)
validateIndicesTestMatrix(x, rows, cols,
fcoltest = colAnys, fsure = rowAnys_R,
value = NA_integer_, useNames = useNames)
validateIndicesTestMatrix(x, rows, cols,
ftest = rowAnyMissings,
fsure = rowAnyMissings_R, useNames = useNames)
validateIndicesTestMatrix(x, rows, cols,
fcoltest = colAnyMissings,
fsure = rowAnyMissings_R, useNames = useNames)
}
}
}
for (rr in seq_len(nrow(x))) {
for (idxs in index_cases) {
validateIndicesTestVector(x[rr, ], idxs,
ftest = allValue, fsure = all_R,
value = 0, na.rm = TRUE)
validateIndicesTestVector(x[rr, ], idxs,
ftest = allValue, fsure = all_R,
value = 0, na.rm = FALSE)
validateIndicesTestVector(x[rr, ], idxs,
ftest = allValue, fsure = all_R,
value = NA_integer_)
validateIndicesTestVector(x[rr, ], idxs,
ftest = anyValue, fsure = any_R,
value = 0, na.rm = TRUE)
validateIndicesTestVector(x[rr, ], idxs,
ftest = anyValue, fsure = any_R,
value = 0, na.rm = FALSE)
validateIndicesTestVector(x[rr, ], idxs,
ftest = anyValue, fsure = any_R,
value = NA_integer_)
}
}
storage.mode(x) <- "character"
# Test with and without dimnames on x
for (setDimnames in c(TRUE, FALSE)) {
if (setDimnames) dimnames(x) <- dimnames
else dimnames(x) <- NULL
for (rows in index_cases) {
for (cols in index_cases) {
# Check names attribute
for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
validateIndicesTestMatrix(x, rows, cols,
ftest = rowAlls, fsure = rowAlls_R,
value = "0", na.rm = TRUE, useNames = useNames)
validateIndicesTestMatrix(x, rows, cols,
ftest = rowAlls, fsure = rowAlls_R,
value = "0", na.rm = FALSE, useNames = useNames)
validateIndicesTestMatrix(x, rows, cols,
ftest = rowAlls, fsure = rowAlls_R,
value = NA_character_, useNames = useNames)
validateIndicesTestMatrix(x, rows, cols,
fcoltest = colAlls, fsure = rowAlls_R,
value = "0", na.rm = TRUE, useNames = useNames)
validateIndicesTestMatrix(x, rows, cols,
fcoltest = colAlls, fsure = rowAlls_R,
value = "0", na.rm = FALSE, useNames = useNames)
validateIndicesTestMatrix(x, rows, cols,
fcoltest = colAlls, fsure = rowAlls_R,
value = NA_character_, useNames = useNames)
validateIndicesTestMatrix(x, rows, cols,
ftest = rowAnys, fsure = rowAnys_R,
value = "0", na.rm = TRUE, useNames = useNames)
validateIndicesTestMatrix(x, rows, cols,
ftest = rowAnys, fsure = rowAnys_R,
value = "0", na.rm = FALSE, useNames = useNames)
validateIndicesTestMatrix(x, rows, cols,
ftest = rowAnys, fsure = rowAnys_R,
value = NA_character_, useNames = useNames)
validateIndicesTestMatrix(x, rows, cols,
fcoltest = colAnys, fsure = rowAnys_R,
value = "0", na.rm = TRUE, useNames = useNames)
validateIndicesTestMatrix(x, rows, cols,
fcoltest = colAnys, fsure = rowAnys_R,
value = "0", na.rm = FALSE, useNames = useNames)
validateIndicesTestMatrix(x, rows, cols,
fcoltest = colAnys, fsure = rowAnys_R,
value = NA_character_, useNames = useNames)
validateIndicesTestMatrix(x, rows, cols,
ftest = rowAnyMissings,
fsure = rowAnyMissings_R, useNames = useNames)
validateIndicesTestMatrix(x, rows, cols,
fcoltest = colAnyMissings,
fsure = rowAnyMissings_R, useNames = useNames)
}
}
}
}
for (rr in seq_len(nrow(x))) {
for (idxs in index_cases) {
validateIndicesTestVector(x[rr, ], idxs,
ftest = allValue, fsure = all_R,
value = "0", na.rm = TRUE)
validateIndicesTestVector(x[rr, ], idxs,
ftest = allValue, fsure = all_R,
value = "0", na.rm = FALSE)
validateIndicesTestVector(x[rr, ], idxs,
ftest = allValue, fsure = all_R,
value = NA_integer_)
validateIndicesTestVector(x[rr, ], idxs,
ftest = anyValue, fsure = any_R,
value = "0", na.rm = TRUE)
validateIndicesTestVector(x[rr, ], idxs,
ftest = anyValue, fsure = any_R,
value = "0", na.rm = FALSE)
validateIndicesTestVector(x[rr, ], idxs,
ftest = anyValue, fsure = any_R,
value = NA_integer_)
}
}
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