enrichmentAnalysis: Perform pathway enrichment analysis on an ordered list of...
In HenryWotton/weighted_merge: Integrative Pathway Enrichment Analysis of Multivariate Omics Data

Perform pathway enrichment analysis on an ordered list of genes

1	enrichmentAnalysis(genelist, gmt, background)

`genelist`	character vector of gene names, in decreasing order of significance
`gmt`	GMT object
`background`	character vector of gene names. List of all genes being used as a statistical background

a data.table of terms with the following columns:

term.id: The id of the term
term.name: The full name of the term
adjusted.p.val: The associated p-value adjusted for multiple testing
term.size: The number of genes annotated to the term
overlap: A character vector of the genes that overlap between the term and the query

HenryWotton/weighted_merge documentation built on Feb. 25, 2021, 10:29 p.m.

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