hypergeometric: Hypergemoetric test
In HenryWotton/weighted_merge: Integrative Pathway Enrichment Analysis of Multivariate Omics Data
Description
Usage
Arguments
Value
View source: R/statistical_tests.r
Description
Perform a hypergeometric test, also known as the Fisher's exact test, on a 2x2 contingency
table with the alternative hypothesis 'greater' . In this application, the test finds the
probability that counts[1, 1] or more genes would be found to be annotated to a term (pathway),
assuming the null hypothesis of genes being distributed randomly to terms.
Usage
1
hypergeometric(counts)
Arguments
counts
A 2x2 numerical matrix representing a contingency table.
Value
a p-value of enrichment of genes in a term or pathway.
HenryWotton/weighted_merge documentation built on Feb. 25, 2021, 10:29 p.m.
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Description Usage Arguments Value
View source: R/statistical_tests.r
Description
Perform a hypergeometric test, also known as the Fisher's exact test, on a 2x2 contingency table with the alternative hypothesis 'greater' . In this application, the test finds the probability that counts[1, 1] or more genes would be found to be annotated to a term (pathway), assuming the null hypothesis of genes being distributed randomly to terms.
Usage
1 | hypergeometric(counts)
|
Arguments
counts |
A 2x2 numerical matrix representing a contingency table. |
Value
a p-value of enrichment of genes in a term or pathway.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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