phyExample: A phyloseq-class experiment-level object example data.

In Hlch1992/Rprojects: Statistical modeling and inference of microbial interaction and stability for microbial dynamical systems

Description

This data is a phyloseq-class object which contains the OTU table, sample data, taxonomy table and phylogenetic tree information. Details about the phyloseq class please see the R package "phyloseq".

Usage

data("phyExample")

Format

A phyloseq-class experiment-level object

otu_table()

OTU Table: [ 20 taxa and 1050 samples ]

..@ .Data: a matrix where each row represents the suject,each column represents the OTU.

..@ taxa_are_rows: logi FALSE

sample_data()

Sample Data: [ 1050 samples by 8 sample variables ]

A data frame with 1050 observations for six covariates w1...w6 and two variables time and subjid.

w1...w6: numeric vectors as binary covariates;

time: a numeric vector indicating the time of sampling;

subjid: a string vector indicating which subject the sample belonging to.

Examples

data(phyExample)

Hlch1992/Rprojects documentation built on Feb. 10, 2020, 12:30 a.m.