ARZIMM-package: ARZIMM: Statistical modeling and inference of microbial...

In Hlch1992/Rprojects: Statistical modeling and inference of microbial interaction and stability for microbial dynamical systems

Description

This package is developed to model microbial dynamical systems from longitudinal microbiome data and infer microbial interaction and stability.

Details

Package:	ARZIMM
Type:	Package
Version:	0.0.0.9000
Date:	2020-02-02
License:	GPL (>= 2)

Author(s)

Linchen He, Huilin Li Maintainer: Linchen He <Linchen.He@nyulangone,org>

References

Modeling and inference of microbial interaction and stability on the longitudinal microbiome data

Examples

## Not run: 
require(ARZIMM),
data(sampleparameters)
set.seed(1234)
simMixTime(baseFdataN2M=parameters$baseFdataN2M,conFdataN2L=parameters$conFdataN2L,timeN=parameters$timeN,
interceptM=parameters$interceptM,betaMM=parameters$betaMM,gammaLM=parameters$gammaLM,
sigmaM=parameters$sigmaM,biN2M=parameters$biN2M)

data(sampledata)
Varname=colnames(sampledata)[1:20]
Conname=colnames(sampledata)[21:26]
Tname=colnames(sampledata)[27]
IDname=colnames(sampledata)[28]
ARZIMM::ARZIMM(Varname = Varname,Conname = Conname,fdata = sampledata,
IDname = IDname,Tname = Tname,bootpara=list(bootpval=TRUE,nboot=100))


## End(Not run)

Hlch1992/Rprojects documentation built on Feb. 10, 2020, 12:30 a.m.