Files in Hoffmann-Lab/PhyloEpiGenomics
What the Package Does (One Line, Title Case)
DESCRIPTION
LICENSE
NAMESPACE
PhyloEpiGenomics.Rproj
R/functions.R
README.html
README.md
Usage_examples.R
data/PhyloEpiGenomics_example_data.RData
man/maximize_clock_tree_log_likelihood.Rd
man/maximum_parsimony.Rd
man/simulate_evolution.Rd
readme_plots/correct_rooted_topology.jpg
readme_plots/correct_unrooted_topology.jpg
readme_plots/distance_based.jpg
readme_plots/inner_nodes_labeled.jpg
readme_plots/ml_best_meth_tree.jpg
readme_plots/ml_best_nucl_tree.jpg
readme_plots/ml_best_nucl_tree_clock.jpg
readme_plots/ml_meth_tree_based_on_nucl.jpg
readme_plots/ml_meth_tree_based_on_nucl_2.jpg
readme_plots/parsimony.jpg
readme_plots/parsimony_2.jpg
readme_plots/wrong_rooted_topology.jpg
readme_plots/wrong_unrooted_topology.jpg
